Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0916 ATGGCGACGGCAGCGGCGTCACGGCGGCTTCGGGATCTGCAGTCCCAACCAGCAAACAAGATCTGCGTAGACTGCTCCCAGAAGAACCCGCAGTGGGCCTCCGTCTCCTACGGCGTCTTCATGTGCCTCGAGTGCTCCGGCAAGCACCGCGGCCTCGGCGTGCACATCTCCTTCGTCCGATCCGTCACCATGGACGCATGGTCCGAAATCCAGCTCAAGAAAATGGAAGCTGGCGGCAACAATAACCTCAACTCCTTCCTCGCCTCTTATTCTGTTCCCAAGGAAACTGATATAGTTAAGAAGTACAACACCAAAGCCGCCGCTATCTACCGTGATCGCATCGCCGCAATTGCCGAAGGGCGGCCGTGGCGCGATCCGCCTGTTCAGAGGGAGGATCTCGCCGGAGGATTCGCTACTGGAAAGGGAAAGCCTCCGATGAACGGCGGTGGAGGAGGAAACAAGCGGAATGACGGCGATTGGGAGGATTGGGGAACCGATGACGGTTTCGGCGGGGATTTGCGACGGAATCAGTCTGCTGGCGATGTGAGAAGTGTTGGCGGTGGCGGTGWTGTGGCGGGGAGGTCTAAGTCGAGTGAGGATATTTACACGCGGTCGCAGCTTGAGGCTTCGGCGGCTAACAAGGAGAGCTTCTTCGCGAGGAAGATGGCGGAGAATGAGTCGCGGCCGGAGGGGCTTCCGCCGTCGAAGGGAGGGAAATACGTCGGTTTTGGATCGAGTCCTGWGCCCATGGCGGCGCAGAGGATCAATCAGCAAAACGACTATTTCTCCGTCGTTTCGCAGGGGTTTGGTAAATTATCGTTGGCGGCTCAGACTGCTGCTTCTAAGGTCAAAGAGGGTGGTTATGATCAAAAAGTCAATGATGTCACTCAGAAGACATGGGGTATAATGAAAGGTGTCATAGCTATGGCTTCAGAGAAGGTAGAAGAGTACACCAGAGATGGCTCAAATGGAATGAACAATAATTGGCAACAAAATGAGAGTGGCAGGAATGGTTACCATCAGGATTTCAATCAACAGAACCAGGGATGGAATTCTTCTACCAGAACTGAACAATCCTCTTCTAAGCAATTTAACACCCACAGCTCAAGTTCTTGGGATGATTGGAACAATAAAGGTAGTAGGAACGGAAAACCAGCAAATGGATCAACAACTCAAAATTCAAGCTCTTGGGATGATTGGGGGCACAAAGGTTCCAGGAAGGAAGAACCAGTGAGAGGATCGGCGACAAATAACGACGATGGATGGGCTGGCTGGGATGATGACAAAGATGATGGATTTGATCATTCTTATTATGAAGGTGGATCTAAAGATAAGAAAGGTGTTACTAACTATGGGAAATCCGATGGTGGCTGGACAGGGGCAGGCTTTGCCTAA 1395 0.5211 MATAAASRRLRDLQSQPANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDAWSEIQLKKMEAGGNNNLNSFLASYSVPKETDIVKKYNTKAAAIYRDRIAAIAEGRPWRDPPVQREDLAGGFATGKGKPPMNGGGGGNKRNDGDWEDWGTDDGFGGDLRRNQSAGDVRSVGGGGXVAGRSKSSEDIYTRSQLEASAANKESFFARKMAENESRPEGLPPSKGGKYVGFGSSPXPMAAQRINQQNDYFSVVSQGFGKLSLAAQTAASKVKEGGYDQKVNDVTQKTWGIMKGVIAMASEKVEEYTRDGSNGMNNNWQQNESGRNGYHQDFNQQNQGWNSSTRTEQSSSKQFNTHSSSSWDDWNNKGSRNGKPANGSTTQNSSSWDDWGHKGSRKEEPVRGSATNNDDGWAGWDDDKDDGFDHSYYEGGSKDKKGVTNYGKSDGGWTGAGFA* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0916 464 SUPERFAMILY ArfGap/RecO-like zinc finger 8 115 IPR037278 -
Amo04g0916 464 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 389 463 IPR044519 GO:0005096|GO:0016192
Amo04g0916 464 SMART arf_gap_3 4 123 IPR001164 GO:0005096
Amo04g0916 464 MobiDBLite consensus disorder prediction 428 450 - -
Amo04g0916 464 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 389 463 - -
Amo04g0916 464 MobiDBLite consensus disorder prediction 225 245 - -
Amo04g0916 464 MobiDBLite consensus disorder prediction 123 203 - -
Amo04g0916 464 MobiDBLite consensus disorder prediction 320 399 - -
Amo04g0916 464 Gene3D Arf GTPase activating protein 1 127 IPR038508 -
Amo04g0916 464 PRINTS HIV Rev interacting protein signature 19 38 IPR001164 GO:0005096
Amo04g0916 464 PRINTS HIV Rev interacting protein signature 38 55 IPR001164 GO:0005096
Amo04g0916 464 PRINTS HIV Rev interacting protein signature 59 80 IPR001164 GO:0005096
Amo04g0916 464 Pfam Putative GTPase activating protein for Arf 8 105 IPR001164 GO:0005096
Amo04g0916 464 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 4 393 IPR044519 GO:0005096|GO:0016192
Amo04g0916 464 MobiDBLite consensus disorder prediction 318 464 - -
Amo04g0916 464 ProSiteProfiles ARF GTPase-activating proteins domain profile. 7 123 IPR001164 GO:0005096
Amo04g0916 464 MobiDBLite consensus disorder prediction 400 414 - -
Amo04g0916 464 CDD ArfGap_ArfGap1 6 120 - -
Amo04g0916 464 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 4 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0916 Amo-Chr4 32680368 32683253 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0916 8 90 C2H2 Transcription Factor Family AT4G05330 51.190 2.87e-23 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0916 K12492 - gmx:100792658 575.859