Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0891 ATGCCAGTTCCACTTGCTCCTTATCCAACACCACCGGCTCCACATACTCCTCCATCCGCAAATGGTCAACAGAGTCAACTTGTGTGTTCTGGCTGTAGAAACCTTTTGCTCTATCCGGTTGGAGCCTCCTCTGTTTGCTGTGCTGTTTGCAATGCAGTCACCGCCGTGCCGCCTCCCGGAACGGAAATGGCCCAGTTAATCTGTGGAGGCTGCCATACATTACTAATGTACATCCGTGGCGCAACAAGTGTCCAATGCTCATGCTGTCACACTGTGAATCTAGCCATGGAAGCAAATCAGGTGGCACATGTCAATTGTGGCAGCTGCAGGATGCTACTGATGTACCAATATGGAGCAACATCTGTTAAATGTGCAGTTTGCAATTTTGTAACTTCAATTGGGGCATCAACAAGCATCACAGAGCAGAAGTTCAGCAACTAA 441 0.4853 MPVPLAPYPTPPAPHTPPSANGQQSQLVCSGCRNLLLYPVGASSVCCAVCNAVTAVPPPGTEMAQLICGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGSCRMLLMYQYGATSVKCAVCNFVTSIGASTSITEQKFSN* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0891 146 Pfam LSD1 zinc finger 29 53 IPR005735 -
Amo04g0891 146 Pfam LSD1 zinc finger 68 92 IPR005735 -
Amo04g0891 146 Pfam LSD1 zinc finger 106 130 IPR005735 -
Amo04g0891 146 SUPERFAMILY Multiheme cytochromes 29 127 IPR036280 -
Amo04g0891 146 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 26 56 IPR005735 -
Amo04g0891 146 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 65 94 IPR005735 -
Amo04g0891 146 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 103 132 IPR005735 -
Amo04g0891 146 PANTHER PROTEIN LSD1 1 143 IPR040319 -
Amo04g0891 146 PANTHER PROTEIN LOL1 1 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0891 Amo-Chr4 30476507 30478917 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Amo04g0891 zf-LSD1 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0891 - - rcu:8284618 248.054