Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0882 ATGACTTGGAAGGTCCCTGAAGAACATAGTACTAAATTTGATGGATCTTCTATTTTGAAGGAGACTGACATTGGGAGGCATGTGAATCGGTTGCGAAAGCATTCCTCCAATGGCATTCGTAGATTGGTGAAGCTACTTGTGAGGAAGTGGAAGGAAATTGTGGATGAGTGGGTGAGGTTGAATCAACCGGGTGGAACAGCTTCTCTCATGGGTAAAACCAAACCTCAACTCAAATGTTTTGGGACATTTTTCTTAGTTAAGGAATTAAAAATCCAAGCGCCCCTTGAGTTGCCTTTTCCTCAAAAGAACGAGCAGCAAAGCATATCTTTTGACAGAGACAGACGCTTTCACCTGAAGTATCAGCAAAGGAGGAGTATGCAAAAGAATTTTACAGGTACCATGGATGTGGATTCAAGTTATCAGAGTGGTAATGAATCTGGAAAAGCACACTGCCCTCCAAGGGAGCACAACAATGAACCAAGCATTCAAGGCTTCACTGCCCTGCCCTCCTTGAGGGTGGAGCACAATTCTAGGCCAAGAATAAGGGAAGGAAAAATTCTGCCCTGCCCTCGTCAAGAGCAATTTCGGGCTCCTCATGGAAAAATTCAAGGAAATTGTTCTCCAAGTGCCACCCATGGGTTTCGAACCAAGCTCAAGAGGGAAGGAAGTAGCATTCAAATGAAAGGAAAACAAGCCAAAATTAGTTTGTTTTCAACCTCCAAGGATCGAACACAAGACCTTGAGGAAGCAAGAAACTAG 759 0.4387 MTWKVPEEHSTKFDGSSILKETDIGRHVNRLRKHSSNGIRRLVKLLVRKWKEIVDEWVRLNQPGGTASLMGKTKPQLKCFGTFFLVKELKIQAPLELPFPQKNEQQSISFDRDRRFHLKYQQRRSMQKNFTGTMDVDSSYQSGNESGKAHCPPREHNNEPSIQGFTALPSLRVEHNSRPRIREGKILPCPRQEQFRAPHGKIQGNCSPSATHGFRTKLKREGSSIQMKGKQAKISLFSTSKDRTQDLEEARN* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0882 252 Pfam TFIIS helical bundle-like domain 18 54 IPR017923 -
Amo04g0882 252 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 16 64 IPR035441 -
Amo04g0882 252 CDD TFIIS_I 18 55 - -
Amo04g0882 252 MobiDBLite consensus disorder prediction 133 162 - -
Amo04g0882 252 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 19 70 IPR044790 -
Amo04g0882 252 MobiDBLite consensus disorder prediction 220 252 - -
Amo04g0882 252 ProSiteProfiles TFIIS N-terminal domain profile. 1 57 IPR017923 -
Amo04g0882 252 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 17 63 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0882 Amo-Chr4 29694085 29695923 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Amo04g0882 Med26 4.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0882 - - adu:110280706 191.43