Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0871 ATGGATGATGAAGTTATTCAGCGAGTGTTCCACGAAGGAGGACGCGATTTCTACCAGCAGCAACCTTCAACTTCCTCCATCCTTCAATCTCTCCCTCTCCATGTGTCTTTTGATCATGGCTATTATTTACTGGTAAAATCTATCCAAGAACTACGTGAGAAAAAGGAAGGCCTTGTTACGGTTGGAATTGGTGGTCCTAGTGGCTCTGGAAAAACAAGCTTAGCAGAAAAGGTGGCATCCGTTATTGGTTGTACTGTTATATCAATGGAGAATTATCGTGATGGAGTTGATGAAGGGGGTGATCTGGATTTTATAGATTTCACGAGCTTGATCAAGAATCTTGAGGATTTGATAAAAGGTGATGATACATTAGTCCCAGTGTTTGATTATCAGCAAAAGAGACGTGTTGGCTATAAAGCTATAAAGAGTACTGCATCTGGGGTGATAATAGTTGATGGAACATATGCATTACATGCAAAACTGCGTTCTTTACTGGATATTCGAGTTGCTGTGGTTGGCGGTGTTCATTTTAGTCTGCTTTCTAAAGTTCGCTATGACATTGGAGATTCTTGTTCACTGGATAGCCTTATAGACAGCATTTTTCCATTATTTAGGAAGCATATTGAGCCAGATCTTCATCATGCACAGATCAGAATTAACAACAGTTTTGTATCATCATTTAGAGAGGCAATCTACAAGGTTAAATGCAGAAGTGAGTCTCCAGAGGGATATTCAAGTACTGCCTTTCAAGGGAATGAATCCCAAACAGATAATTGTATTGAAATGTACCTTAGACCACCTTCCACTAGTGAAGAAGCAAGGATAAATGATTGGATCAAAGTGCGGCAGTCTGGAATTAGATATTATTTATCACTTGGTGACCAGAGGATTGTTGACAAAAATTTTATTATCAGGCCTAAAGCAGAGTTTGAGGTTGGACGAATGACATTGGGTGGATTGTTGGCTCTTGGATACACAGTTGTCGTTAGTTATAAACGCTCATCCACAACTGTTGATAATGGCAAGGTTTTGGTGTCTTTTGAAACCATTGATGCCCTTGATGAGACATTCATGGTGATGAGAGGAACTAATAGGAAGACTGTTGGAACAGAAGCAATGAGGCTTGGTATCAATGGACCTTGGATTACTAAATCATATCTTGAGATGATCCTGGATAAAAAAGGTGTTCCTCGTCTTAGTACACCACCACTGGTGACTAATACATCTGTGCCTGGAAGTCAAGACACTGCAATCATTGCACCAAAACCAATTCGCGTGACTCCTGACCTTGTTACGGGATTGGAGGATTTGTCTCAGCCATGGACTCGGTCCCCTACAAAATCTAAAATGGAACCTGTTATGGCAACATGGCATTTCATATCTTCAGATTCTTCCCACCCTGACAACTCAGTCCTAGATCCTTCATCTTTCAGGGATACCATTAGGCTTGCTCCAATGCCTGAGTCATGTGACCTGGATAGGGGATTGCTTTTGGCTGTTCAAGCCATACAAGCTTTGTTGGAAAATAAAGGTTTCCCAGTCATAGTTGGAATTGGAGGTCCAAGTGGTTCTGGAAAGACTAGTTTGGCTCATAAAATGGCGAATATTATTGGATGTGAAGTGTTATCCCTGGAAAGCTATTATAAACAAGTAAAGGATTTCAAATATGATGACTTCAGCTCTCTTGACTTATCTTTGCTATCAAAGAATATTAGTGACATAAGAAAAGGCCGAAGAACAAAAGTACCAATATTTGACTTGGAAAGTGGTGCTCGGAGTGGCTTCAAGGAACTTGAAGTTTCAGAAGATTGTGGAGTGATAATTTTTGAAGGTGTCTATGCTTTGCATCCTGATATCCGAGTATCACTTGATTTTTGGATTGCTGTTGTAGGAGGAGTTCATTCACATTTGCTTTCACGAGTTCAAAGGGATAAGAGTAGAGTGGGTTGTTTTATTTCCCAGAATGAGATCATGATGACGGTGTTTCCAATGTTCCAGCAGTACATTGAACCTCATCTCGTTCATGCACACCTTAAAATTCGAAATGACTTTGATCCTGTGCTTTCTCCTGAGAGTTCATTGTTTGTGTTGAAGAGTAACAAGAAAGTAGCATATCAAGATATTCTTGCAATTCTTGACCGAGCAAAATTTTGCAGTTCTGTTCAGAAATTTATTGATATTTATATAAGGCTGCCTGGGATCCCTTCTAATGGGCAGTTGACAGAAAGTGATTGTATTCGAGTCAGAATATGTGAAGGAAGATTTGCCTTGCTGATACGTGAGCCTATTAGAGAAGGAAACTTCATCATTCAGCCTAAAGTGGATTTTGATATTGGCATTAGTACAGTTGCTGGTCTTCTTAATCTTGGGTATCAGGCAGTTGCTTACATTGAAGCCTCTGCATTCATCTATCAGGATGGAAAGATTCTAATTGAGGTTGATCATCTACAAGATGTCCCTGGCCCATATATTCAGATCAAGGGTGTTAATAAAGATGCAGTGGCAGCAGCGGGTTCAATGCTTGAATTGGATGGCTCATATACAACTAAGAGTTATCTTGAAATAATTTTAGAAAGACTACCAACAATAGAAAGAACTTCTGGTGGGATTAACTCTCAGCAATCAGCAAGGCTGCTAGAGATTATTGAATTTATTCAATCTCAGGGGTGCAGCTCTCCTTCAGAATCATCACCAAGTAGGGGAGTCTCTCCAATTGAAGGGGCTATTGAGGAGATGCAATCAAGGATTAGAAGGCTTGAGAGGTGGCTTGCTATAAATACGGTTCTATGGACATTTCTAATGTCTGCCCTTGTTGGTTTTTCACTGTATCAAAGGAGGCGTCAGTGA 2847 0.4018 MDDEVIQRVFHEGGRDFYQQQPSTSSILQSLPLHVSFDHGYYLLVKSIQELREKKEGLVTVGIGGPSGSGKTSLAEKVASVIGCTVISMENYRDGVDEGGDLDFIDFTSLIKNLEDLIKGDDTLVPVFDYQQKRRVGYKAIKSTASGVIIVDGTYALHAKLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKVKCRSESPEGYSSTAFQGNESQTDNCIEMYLRPPSTSEEARINDWIKVRQSGIRYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLALGYTVVVSYKRSSTTVDNGKVLVSFETIDALDETFMVMRGTNRKTVGTEAMRLGINGPWITKSYLEMILDKKGVPRLSTPPLVTNTSVPGSQDTAIIAPKPIRVTPDLVTGLEDLSQPWTRSPTKSKMEPVMATWHFISSDSSHPDNSVLDPSSFRDTIRLAPMPESCDLDRGLLLAVQAIQALLENKGFPVIVGIGGPSGSGKTSLAHKMANIIGCEVLSLESYYKQVKDFKYDDFSSLDLSLLSKNISDIRKGRRTKVPIFDLESGARSGFKELEVSEDCGVIIFEGVYALHPDIRVSLDFWIAVVGGVHSHLLSRVQRDKSRVGCFISQNEIMMTVFPMFQQYIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKKVAYQDILAILDRAKFCSSVQKFIDIYIRLPGIPSNGQLTESDCIRVRICEGRFALLIREPIREGNFIIQPKVDFDIGISTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDVPGPYIQIKGVNKDAVAAAGSMLELDGSYTTKSYLEIILERLPTIERTSGGINSQQSARLLEIIEFIQSQGCSSPSESSPSRGVSPIEGAIEEMQSRIRRLERWLAINTVLWTFLMSALVGFSLYQRRRQ* 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0871 948 Gene3D - 59 238 IPR027417 -
Amo04g0871 948 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 600 939 - -
Amo04g0871 948 PRINTS Uridine kinase signature 634 644 - -
Amo04g0871 948 PRINTS Uridine kinase signature 513 530 - -
Amo04g0871 948 PRINTS Uridine kinase signature 540 551 - -
Amo04g0871 948 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 2 416 - -
Amo04g0871 948 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 480 600 - -
Amo04g0871 948 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 507 683 IPR027417 -
Amo04g0871 948 SUPERFAMILY CYTH-like phosphatases 711 855 IPR033469 -
Amo04g0871 948 PANTHER URIDINE KINASE 600 939 - -
Amo04g0871 948 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 171 IPR027417 -
Amo04g0871 948 SMART AAA_5 512 656 IPR003593 -
Amo04g0871 948 SMART AAA_5 57 207 IPR003593 -
Amo04g0871 948 PANTHER URIDINE KINASE 480 600 - -
Amo04g0871 948 Gene3D - 512 689 IPR027417 -
Amo04g0871 948 Gene3D - 699 860 - -
Amo04g0871 948 CDD UMPK_like 60 222 - -
Amo04g0871 948 PANTHER URIDINE KINASE 2 416 - -
Amo04g0871 948 Pfam Phosphoribulokinase / Uridine kinase family 515 680 IPR006083 GO:0005524|GO:0016301
Amo04g0871 948 CDD UMPK_like 515 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0871 Amo-Chr4 28866371 28879755 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0871 508 671 PRT Gene Family AT1G55810 25.843 1.97e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0871 - - gmx:100778905 1647.1