Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0753 ATGAAGGGGTCACGAGATGCGCATGAGCCCAGCCACATGCTATCGTTTCTTCCTCTCGTCTCTCTATCTCTGTTGTTATGTTTAGTTTCTGGTTTTGTTAATGCAGATGCCAAAGCTGTTGATAAAGCAAGCGTGATAAGATCAAAACATTCGGTGACTGAGCAGCGAAGAAGAAGCAAGATAAATGAGAGGTATGTGCAACGGGCCAGTGTCATAAGTTCAGTCCTCAGTGCCAGTGTATTTGATGTTGGAGCCCTCAACCATGATGCTTTTGGCCGTCAAGCTGTCAACACTGTTGGCATAATATTGAGGGATCTCATACCTCATAGTGATCAAAAGAGGGACACAGCATCATTCTTACTGGAGGTGATTGAGTATGTTCAGTACTTACAGGAGAAGGTACAAAAGTATGAAGGCTCATATCAGGGTTGGGGTCATGAACCCTCAAAGTTGATGCCATGGAGAAATAGCCATTGGCGTGTGCAAAGCTTTGTTGGGCAACCACAAGCCATAAAGAATGGTTCAGGTCCTGTGTCACCTTTTCCTGGAAAGTTTGACGAAAGCAACATTAGTATCTCTCCAACTATGCTTAGCGGCAACCAGAATATGATAGACACCGATCAGGGTAGGGATATTGTCAGCAAAGCATCCGAAGGACAAACTGATTTAGCTAGCAAGGGAATAGCTCTGCCCTTGGGTATGCACCCAAACATGTCTATTCCTGTCAGAAGCGATGGTGTACTTTCACATCCTCTACAGGGATCTGTTTCAGAAGCGCAGTCAACTGAGTGCCCTGCCGCTAGTGAACCACTGAGCCAACAGGACGAGCTGACTATTGAAGGAGGGACAATCAGCATTTCTAGTGTGTACTCCCAAGGTGCTGTAAAGAATTCCAATGGTTATGAATACGAGTTGTTGAACAATCTGACTCAGGCACTACAGAGTGCTGGTTTAGATCTATCACAGGCCAGCATTTCGGTTCAGATTAATCTTGGAAAACGAGCAAACAATGGACCAAGCTGTGGGACCTCTTCTCCCAAGAATCACGACATGGTTCCTTCCAGCAACCAAGCTTTTGCACAGTTTAGAGATGCAGGCAGTGAAGACTCGGACCAAGCTCAGAAACGTCTGAAAACATTCAAGTGA 1146 0.4555 MKGSRDAHEPSHMLSFLPLVSLSLLLCLVSGFVNADAKAVDKASVIRSKHSVTEQRRRSKINERYVQRASVISSVLSASVFDVGALNHDAFGRQAVNTVGIILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGWGHEPSKLMPWRNSHWRVQSFVGQPQAIKNGSGPVSPFPGKFDESNISISPTMLSGNQNMIDTDQGRDIVSKASEGQTDLASKGIALPLGMHPNMSIPVRSDGVLSHPLQGSVSEAQSTECPAASEPLSQQDELTIEGGTISISSVYSQGAVKNSNGYEYELLNNLTQALQSAGLDLSQASISVQINLGKRANNGPSCGTSSPKNHDMVPSSNQAFAQFRDAGSEDSDQAQKRLKTFK* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0753 381 PANTHER TRANSCRIPTION FACTOR BIM2 30 66 - -
Amo04g0753 381 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 130 IPR011598 GO:0046983
Amo04g0753 381 Gene3D - 44 149 IPR036638 GO:0046983
Amo04g0753 381 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 30 66 IPR044295 GO:0003700|GO:0006351|GO:0046983
Amo04g0753 381 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 93 144 IPR036638 GO:0046983
Amo04g0753 381 CDD bHLH_AtBIM_like 44 155 - -
Amo04g0753 381 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 95 379 IPR044295 GO:0003700|GO:0006351|GO:0046983
Amo04g0753 381 MobiDBLite consensus disorder prediction 250 271 - -
Amo04g0753 381 PANTHER TRANSCRIPTION FACTOR BIM2 95 379 - -
Amo04g0753 381 MobiDBLite consensus disorder prediction 334 356 - -
Amo04g0753 381 SMART finulus 51 136 IPR011598 GO:0046983
Amo04g0753 381 MobiDBLite consensus disorder prediction 241 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0753 Amo-Chr4 23752299 23758029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0753 34 348 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 50.159 8.49e-93 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo04g0753 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0753 - - gmx:100816055 476.863