Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0750 ATGGACAGAGGCGGTTATAATCAGAGACGTGGTGGTGGTAACGCCAGAGGCGACGGAAGAGGAGGCCGCATGAGAGGAAGAGCAAGAGGAAGAAACTTTTCCCAACCCCCACGGCAACCGGCTGACAGTGGCGGAGGAAGAGGCACCGCCGGCAGAGGATTTTATCCGCAACCACCACCACCACAGTGGCAGCCAAGGCAGCAGAACACCATCTCCGGGGGCACATCAACCGCAACCGGCAGCGGAACCGCACCTCCAAGTCTCGTTTCCCCTCCGTCAAACCCTCCTCCTCCCACTCAAAAAGTTGTTCCGGTTGCCGGAATGGGAACGATTGGAACGTCTTCAGACTCCAATGAAACGATCTCACCCATTCAGAGGCCCGACGCCGGTGGCACGGTGGCGGTTAGGATCAAGACTCTTCAGGTGAACCATTTTCCAGTGAAATTCAACCCAGAGAGCAGGATCATGCACTACAATGTCGATGTGAGTCCCCAATCGCCGCCACAACCAGGCCGTCCACCGAGGAGGATATCAAAGACCGAACTGTCATTGATCCGTGACAAGTTGTTCCTTGACCATCCGGAGCTGCCGCTAGAGATGACTGCCTACGATGGTGAGAAGAACATTTTTAGCAAGGTTAGTTTGCCCGAAGAGGCTTTTGTGGTGGAAGTGTCCAAGGGAGAGGACGAGAGGCCCACAGGATTCAACGTGACGTTGACTCTAGTCAACATTCTTGAGATGAGTAGGTTGGAGGATTACATCAGAGGCAGGGCATTGTCAATCCCCAGAGTGATCTTGCAGGGTGTCGATGTGGTCTTCAAGGAGAATCCAACAAAATGTACTGTTCCGGTTGGTCGCTGCTTCTACCCAATGAACCCGAAATTTAGAGAGACGAATCTTCAGCCTGGTGTGATTGCTGTTGGAGGGTTTCAGCATAGTCTCAAACCAACCCGTCAAGGACTGTCATTGTGCTTGGATTATTCGGTTTTGTCTTTCAAGAAAAAAATGCCAGTGCTGGATTTCCTTCATCAACAGATTACCGGTTTCAATTTGCGCGAATTCGGAAGGTACAGAAAACATGTTGAAAATGTGCTAATTGGTTTGAAGGTTCATGTCACCCACCGGAGGACCAAACAGAAGTACACAGTTGCTCGATTAACTGGCAAGGACACGCGACAAATCACTTTCCCTACCGTGGATGCACAGGGGAACCCCACTGGGCAGCTTAACCTTGTTGGCTACTTCCACGATAGGTATCAGATTGATATCAGGTACAAGGACATCCCTGCATTGGATTTTGGAGGTAACAAGACCAACTATGTGCCAATGGAACTTTGTGTCTTGGTTGAGGGTCAGAGGTATCCCAAAGAGTATTTGAGTAAGGATGCTGCGAAGAATTTGAAAGATATGTGCCTGCCTCCACCGAGAGTGAGGCAAGCTGCAATACAGGATATGGTGAATTCAAGATGTGGACCCTGTGGGGGTGGTATCGTTGAAAATTTTGAAATGAATGTCAGCAATGCTATGACAACAGTGACTGGCCGTGTACTTGGACCCCCAAAACTGAAGCTTAGCGATCCAAGTGGCAGGACTATCAAGATGGCATTGACTCCAGAGAAGTGCCAATGGAATTTAGTTGAGAAGTCAATGTTTGAAGGTAAGCCAGTTGAGTGTTGGGGCATTCTTGATTTCACCTTCCGCAGTAAATGTATCTTTAGCGGTCAAAGATTCATTTCTAAGCTTATTGAGAAGTACGATAAATTTGGCATCATCATGAAGGAGCCAGTTTGGATAGAAAAAACAGACATGTTGAAACTTGGCAACTATAATCAGCTTTCTGACTTACTTGAAAAGATTAATGATGAGGTTTTCAGAAAATGTAGATGCCGGCTGCAATTTCTTCTGTGTGTAATGGCCTACAAAGATCCAGGTTACAAGTGCCTCAAGTGGATTGCTGAGACCAAGGTCGGCATTGTGACACAGTGCTGCTTGTCGGGTAATACTAATTCTGCAAAAGATCAATATCTTACTAATCTTGCTCTCAAGATCAATGCGAAAATTGGAGGCAGCAATGTGGAGCTTATTAATAGGCTTCCTCACTTTGAGGGCGATGGTCATGTTATGTTTATCGGGGCTGATGTAAATCATCCGGCTTCCAGAGATGCAAATAGTCCATCAATGGCTGCTGTGGTTGCCACTGTTAATTGGCCGGCTGCAAACCGCTATGCTGCTCGAGTTTGTGCTCAAGAGCATCGCACTGAGAAGATTTTGAACTTTGGAGAAGTTTGCCTTGAGCTTGTTTCATGTTATGAAAGGCTGAATGGAGCCAAGCCTGAAAAGATTGTTATCTTCCGTGATGGGGTCAGTGAAAGTCAATTTCAGATGGTTCTTGGTGAAGAGCTTCAGGATTTGAAGAGGACCTTTGAACGTGCAAATTACTCCCCAACCATTACTCTTATTGTGGCACAAAAGCGACACCAGACTCGACTCTTCCCTTCTCCTCCTGATAATGAGACGACGTCTGCTACTCGCGGCAATGTGTTGCCTGGAACAGTAGTGGATACAGTCATCATCCACCCCTTTGAGTTTGACTTTTATCTGGTTAGTCACCATGGAAGCCTGGGAACAAGCAAGCCCACTCATTACCATGTCTTGTGGGATGAGCACGATTTCACGTCAGATAAACTCCAGGAACTGATATATGACATGTGCTTTACGTTTGCGCGGTGCACGAAACCTGTGTCTTTAGTCCCTCCGGTGTACTATGCTGACCTTGCTGCATACAGAGGACGACAATACTATGAAGCAAAGATTGGGATGCAATCTCCGTATTCAGCTACATCTTCTTCATCATCACCTTTGGCTTCTTCATCCGTTTCTTCAGCTACTTCAAATTCGAATGATATGGACTTCTACAAGCTGCATTCTGATCTGGAAAATATAATGTTCTTCATCTAA 2958 0.4696 MDRGGYNQRRGGGNARGDGRGGRMRGRARGRNFSQPPRQPADSGGGRGTAGRGFYPQPPPPQWQPRQQNTISGGTSTATGSGTAPPSLVSPPSNPPPPTQKVVPVAGMGTIGTSSDSNETISPIQRPDAGGTVAVRIKTLQVNHFPVKFNPESRIMHYNVDVSPQSPPQPGRPPRRISKTELSLIRDKLFLDHPELPLEMTAYDGEKNIFSKVSLPEEAFVVEVSKGEDERPTGFNVTLTLVNILEMSRLEDYIRGRALSIPRVILQGVDVVFKENPTKCTVPVGRCFYPMNPKFRETNLQPGVIAVGGFQHSLKPTRQGLSLCLDYSVLSFKKKMPVLDFLHQQITGFNLREFGRYRKHVENVLIGLKVHVTHRRTKQKYTVARLTGKDTRQITFPTVDAQGNPTGQLNLVGYFHDRYQIDIRYKDIPALDFGGNKTNYVPMELCVLVEGQRYPKEYLSKDAAKNLKDMCLPPPRVRQAAIQDMVNSRCGPCGGGIVENFEMNVSNAMTTVTGRVLGPPKLKLSDPSGRTIKMALTPEKCQWNLVEKSMFEGKPVECWGILDFTFRSKCIFSGQRFISKLIEKYDKFGIIMKEPVWIEKTDMLKLGNYNQLSDLLEKINDEVFRKCRCRLQFLLCVMAYKDPGYKCLKWIAETKVGIVTQCCLSGNTNSAKDQYLTNLALKINAKIGGSNVELINRLPHFEGDGHVMFIGADVNHPASRDANSPSMAAVVATVNWPAANRYAARVCAQEHRTEKILNFGEVCLELVSCYERLNGAKPEKIVIFRDGVSESQFQMVLGEELQDLKRTFERANYSPTITLIVAQKRHQTRLFPSPPDNETTSATRGNVLPGTVVDTVIIHPFEFDFYLVSHHGSLGTSKPTHYHVLWDEHDFTSDKLQELIYDMCFTFARCTKPVSLVPPVYYADLAAYRGRQYYEAKIGMQSPYSATSSSSSPLASSSVSSATSNSNDMDFYKLHSDLENIMFFI* 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0750 985 SUPERFAMILY PAZ domain 332 487 IPR036085 GO:0005515
Amo04g0750 985 Gene3D paz domain 331 454 - -
Amo04g0750 985 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 110 984 - -
Amo04g0750 985 SMART Piwi_a_2 633 935 IPR003165 GO:0003676
Amo04g0750 985 MobiDBLite consensus disorder prediction 110 125 - -
Amo04g0750 985 Pfam PAZ domain 355 462 IPR003100 GO:0005515
Amo04g0750 985 SMART PAZ_2_a_3 336 472 IPR003100 GO:0005515
Amo04g0750 985 CDD PAZ_argonaute_like 336 449 - -
Amo04g0750 985 ProSiteProfiles PAZ domain profile. 336 450 IPR003100 GO:0005515
Amo04g0750 985 Pfam Piwi domain 634 934 IPR003165 GO:0003676
Amo04g0750 985 SMART DUF1785_2 282 335 IPR014811 -
Amo04g0750 985 Gene3D - 516 695 - -
Amo04g0750 985 CDD Piwi_ago-like 497 934 IPR045246 -
Amo04g0750 985 MobiDBLite consensus disorder prediction 88 102 - -
Amo04g0750 985 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 110 984 - -
Amo04g0750 985 MobiDBLite consensus disorder prediction 66 87 - -
Amo04g0750 985 Pfam Argonaute linker 1 domain 283 332 IPR014811 -
Amo04g0750 985 SUPERFAMILY Ribonuclease H-like 630 935 IPR012337 -
Amo04g0750 985 MobiDBLite consensus disorder prediction 1 127 - -
Amo04g0750 985 Gene3D - 703 985 IPR036397 GO:0003676
Amo04g0750 985 ProSiteProfiles Piwi domain profile. 633 935 IPR003165 GO:0003676
Amo04g0750 985 Pfam N-terminal domain of argonaute 139 272 IPR032474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0750 Amo-Chr4 23538820 23543307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0750 140 984 Eukaryotic Initiation Factors Gene Family AT1G48410 34.463 3.61e-146 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0750 K11593 - gmx:100805250 1195.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g0999 14 14668653 14673363 Amo04g0750 04 23538820 23543307 hybridization