Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0726 TTGAGTAGGAGATATGAACGGTTTTTCATATTAGAGCGCGAAGAGATAAAACAATATCTTTATTATTATTATTGTATTTTTTTCTTTTTAACTTTCTTCCTCAATCAAATAATAAAAAATAATCATTTTTATTCTCATTTTCTTTTTTCTTTTTTCTTTCCTTCCATTTTCTCTTCAAACAAATATAGGCTTAGTATCTCTTATTTTACACCATCTCCTCCAGGTGCGCGATACTTAACCTTGAATCTCTTTTGGCATGTAGATCCTTCTCCTGCACCTCACAAAATGAGTACGTCAAACTCAAAAGTGAACTTCATTGCAAGTAGTTCTGGAGTTGTAATAGAAAACATAGCTCCATTGAAAACCGTGTCCGGTCCTACAACAAATTTACCGGGGGATGAAGACATTCAACCACTTTCAGGATGCCCATTCTATCATCCGGTTTCAAACGAATTAGCACTTCCTTCAGCTGTAGTCCCAGCTATTCTCAAGTATGGAAGCAAGAGCTGGGACATACAGTATTGCGGACTAGGCAAAAGTTACAACAAGTTCTTTAACCACAGAGGCTGGAAAAAATTTGCTGTTGATAATCATTTGGAGGTTGGGGACGCTTGCGTCTTTGAACTCAAGGAGTCGAGTGAAGAGAAACTTGTCTTCCAAGTTCAAATTCTTAGAGGTGACCTCCCTGAAACTTTTCTT 699 0.3705 LSRRYERFFILEREEIKQYLYYYYCIFFFLTFFLNQIIKNNHFYSHFLFSFFFPSIFSSNKYRLSISYFTPSPPGARYLTLNLFWHVDPSPAPHKMSTSNSKVNFIASSSGVVIENIAPLKTVSGPTTNLPGDEDIQPLSGCPFYHPVSNELALPSAVVPAILKYGSKSWDIQYCGLGKSYNKFFNHRGWKKFAVDNHLEVGDACVFELKESSEEKLVFQVQILRGDLPETFL 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0726 233 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS04G0386900 152 230 - -
Amo04g0726 233 CDD B3_DNA 168 225 IPR003340 GO:0003677
Amo04g0726 233 SUPERFAMILY DNA-binding pseudobarrel domain 165 225 IPR015300 -
Amo04g0726 233 Gene3D - 148 227 IPR015300 -
Amo04g0726 233 SMART B3_2 144 227 IPR003340 GO:0003677
Amo04g0726 233 ProSiteProfiles B3 DNA-binding domain profile. 167 227 IPR003340 GO:0003677
Amo04g0726 233 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 152 230 IPR044837 -
Amo04g0726 233 Pfam B3 DNA binding domain 166 221 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0726 Amo-Chr4 22590780 22593405 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0726 143 230 REM Transcription Factor Family AT4G33280 32.955 4.71e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo04g0726 B3 6.9e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0726 - - adu:107484003 275.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1822 14 39555394 39558497 Amo04g0726 04 22590780 22593405 hybridization