Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0707 ATGGATTTCAATGGGTTGTTTGGAGCTAAAGTGGAAGACTCGGATGAGAACAGCTCTGATGGATATTGTGGCCATTATTATGCAAGTGACGAAGAAGGTGACGAGGATGAAGGTGGTGAGCACTGCGGTGGTGAGGAAGGTGACCCTATAGTTGTCATAGAGGATTTCCTGGGCAGAGAGTTTGATGGGGAGGAGGATGCCTATCTTGTGTATAAGGAGTTTGCTAGAATGAAGGGTTTTGGGGTCCGCAAAGGCAATGTGGGGCGTGTTGATGGGGTTTTGGTCAGGAGAGACTTTTTTTGCCGCCGACAAGGCACAAGACATCCTAAGCACTATGACCGTCCTGAGCGAGTTAGGGAGGAGAGATTGGAGAGTCGAACCGACTGCAAGGCGAAGTTGAAGATTTACTATGATGTGCAACGCAGTGTGTGGAAGGTCAGGACCATCTTCGATAAGCACAACCATGAGCTTGCCCCGGCAATGTTTTCCTACCTCCTGCCTAGCCATCGCAAGATGAGTAATGGTGACAAAGCGCAAGTTGATAGCATGAAGCAGTTTGGGATACCAACATCAAAGATAATGGCTTACATGGCTGGTCAATCTGGAGGGACAACCTCAAGGTGTGAGGGGATTAATCCATACATAAAGGGGTTCCTGAAATCCACTGATAGCATTTTAGAGCTGGTGCACAGCTTAGATTGCATTGTAAAGGATTATCGAAACAACAAAGTCACGGTGCAGTTCTATTCTACGTACTATAGCCCCGTGTTAACCACCGGTCTTGACTCTATTGAGCTTTTTGCATCAAAACTGTACACGCGGGCAGTTTTTAGAGAGGTGAAGAAACAAATCAAGGGTGTTGCGACCTTGCTGTTTCGTGGGAGAGACAGCATAAGCACAACGGTTCTCTACAAGTTTTCAAGGATGGGCACCCCTGGTAGGATTCACAAGGTTTTATTCGACCCTGATGACAAGAAAATTCAGTGCGATTGTGCAATGTGGAATAGCGAGGGTATTCCATGTAGTCACATATTCTGCATGATGAAATACGAGGGTTTGGAACAAATACTGGAGAGTCTTATAATGAGAAGATGGTGCAAGGATGCAAAGGATTGTAGACGGATGCCGGTGACTATGAGACCTGGACATGATGGTCGCATGCTTAGGCAGTCAGCCAGGTATGCCGTCGGGGTGCGCGATGAAGGACCCAATTTGTGGCAAGAACAAAAGGTGCCCCTAAGAGGACGAAGGAGTTCGACCCAAGCAGTCAACCCGACGTCCGATGGAAGAGACGTTGCTGCACCAAATGTGGCATTCCCGGGCATACGAAGAGGACATGCAGAGGGAACTGTGCACGAGGATCAAAGGTCGCCTCATGGCGAAGCTGGTCTGAATAATGTGTCTAGCTCAGCAGTGAATACATCCTCCATGACAAATTGGAGAGGTAGTCCATGTTGGCGTGCTCCGTTCTGTGGCGGGGGAAGTGGGGGGAACTTCTTCCTTGGGGGTCAACACATCTACCAATTCTATGCATCCCAACCTTGCTCCGGGCAACAAAGCGAACCGCCACCGCAGGACGTCATGCGCAGCATGTCGACTCCGACGAGGACAACGAATGAGGACTTGTTTGAAGGGTGGCTGCTCCAGGTACGCGTGTGTTGGTGGTCAATCTCTATTAGTGCTGCCAGCGAAAACGCAGCATTAAAGATTTCCCCACTGTACTATGAGGAGCCGGATCATGATTACTTAATTCCAAGCTCATGA 1764 0.4892 MDFNGLFGAKVEDSDENSSDGYCGHYYASDEEGDEDEGGEHCGGEEGDPIVVIEDFLGREFDGEEDAYLVYKEFARMKGFGVRKGNVGRVDGVLVRRDFFCRRQGTRHPKHYDRPERVREERLESRTDCKAKLKIYYDVQRSVWKVRTIFDKHNHELAPAMFSYLLPSHRKMSNGDKAQVDSMKQFGIPTSKIMAYMAGQSGGTTSRCEGINPYIKGFLKSTDSILELVHSLDCIVKDYRNNKVTVQFYSTYYSPVLTTGLDSIELFASKLYTRAVFREVKKQIKGVATLLFRGRDSISTTVLYKFSRMGTPGRIHKVLFDPDDKKIQCDCAMWNSEGIPCSHIFCMMKYEGLEQILESLIMRRWCKDAKDCRRMPVTMRPGHDGRMLRQSARYAVGVRDEGPNLWQEQKVPLRGRRSSTQAVNPTSDGRDVAAPNVAFPGIRRGHAEGTVHEDQRSPHGEAGLNNVSSSAVNTSSMTNWRGSPCWRAPFCGGGSGGNFFLGGQHIYQFYASQPCSGQQSEPPPQDVMRSMSTPTRTTNEDLFEGWLLQVRVCWWSISISAASENAALKISPLYYEEPDHDYLIPSS* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0707 587 SMART 26again6 327 354 IPR006564 GO:0008270
Amo04g0707 587 MobiDBLite consensus disorder prediction 461 475 - -
Amo04g0707 587 Pfam FAR1 DNA-binding domain 71 158 IPR004330 -
Amo04g0707 587 MobiDBLite consensus disorder prediction 412 475 - -
Amo04g0707 587 MobiDBLite consensus disorder prediction 514 535 - -
Amo04g0707 587 MobiDBLite consensus disorder prediction 413 427 - -
Amo04g0707 587 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 203 375 IPR031052 GO:0006355
Amo04g0707 587 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 53 180 - -
Amo04g0707 587 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 203 375 - -
Amo04g0707 587 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 53 180 IPR031052 GO:0006355
Amo04g0707 587 ProSiteProfiles Zinc finger SWIM-type profile. 316 352 IPR007527 GO:0008270
Amo04g0707 587 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0707 Amo-Chr4 21214695 21218466 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo04g0707 FAR1 4.3e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0707 - - ahf:112709549 353.984