Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0703 ATGGCGACGGAGCAAACCAAGTTCAGCGTTATGTGCAGCCTCTTCAACTGGACGCAGCGTGCCAAGTCGCCGGCCAAGAAGCGCGCAAAGTTCCGCAAGTTCCTCGACTCATTCTGCGCCGACCGCAACTTCTTCCCTGCCATTCGCCTTGTCCTCCCAAACCTCGACCGCGAGCGCGGCTCCTACGGCCTCAAGGAGTCAGTCCTCGCCATTTCCCTCATCGACGCCCTCGGCATGTCTCGCGACTCCGAAGACGCCCTTCGCCTCATTAATTGGCGCAAGGGCGGCGCCAAGACCGGCGCCAATGCCGGCAATTTCGCCCTCGTCGCCACCGAGGTACTGCAGCGCAGGCAAGGTACTGCTTCGGGTGGATTGACGATAAAGGAGGTAAATGACTTGCTTGATCAGTTGGCTGCTAGTGAAAACAGGGCCGAGAAGACTCAGGTTCTTTCTACCTTTATCCAAAAGACAAATGCACAGGAAATGAAGTGGATTATCATGATAGTCCTCAAAGATCTGAAGCTAGGAATTAGTGAAAAAAGCATTTTTCATGAATTCCATCCTGATGCTGAAGACTTATTTAATGTTACATGTGACTTAAAATTAGTGTGTGAAAAACTAAGGGATCGGAATCAGCGTCATAAGCGACAGGATATTGAAGTTGGAAAAGCTGTGCGTCCTCAGCTAGCTAAGAGAGTTGCTAATGCAGCTGAAGCATGGAAGAAGCTTCATGGGAAGGAAGTGGTTGTCGAGTGCAAATTTGATGGTGACCGCATTCAAATTCACAAAAATGGAACAGAGATACATTTCTTCTCGAGGAACTTCCTTGATCATTCAGAATATGCACATGCAATGTCAGAAATCATACAGCAAAACATCTTGGTAGATAGGTGCATACTTGATGGTGAAATGTTGGTTTGGGACAGTTCCTTGAATCGTTTTGCTGAGTTTGGCTCAAATCAGGAAATAGCCAAGGCAGCAAGGGATGGACTTGACAGTGACAGACAGTTATGCTATGTTGCATTTGATATCCTTTATTTTGGAGATACTAGTGTAATTCACCAAACTTTGAAGGAACGACATGAGATTCTCCGTAAAGTTGTGAGGCCATTGAAGGGGCGCCTTGAAATTTTAGTACCTAATGGTGGTCTTAATAGTCATTGCTCTTCTGGTGAACCATGTTGGTCATTCATTGCTCATAATGTGGACGAAGTTGAGAAATTTTTCAAAGAAACTATAGAGAACAGAGATGAGGGAATAGTTATCAAAGACCTCGGTTCTAAATGGGAGCCTAGTGATCGAAGTGGAAAGTGGCTAAAATTGAAGCCTGAGTACATTCAAGCTGGCACTGATCTGGATGTGCTTATCATAGGAGGTTATTATGGCTCTGGACGACGTGGAGGGGAGGTTGCTCAGTTCTTGGTGGGCCTTGCTGAGCGTCCATCCCCAAATACACATCCCAAGCGGTTTATCTCCTTCTGTAGAGTTGGTACTGGGCTTTCTGATGATGAGCTTGATGCGTTAGTAACAAAACTCAAACCTTACTTCCGAAAGTATGAATATCCGAAGAAGAGGCCGCCAAGTTTCTATCAAGTAACTAATCATTCAAAAGAAAGGCCTGATGTGTGGGTTGATAGCCCTGAAAAATCGATTATTCTGTCCATAACCAGTGATATCCGAACTATAGAATCTGAGGTATTTGCTGCACCGTACAGCCTGAGGTTTCCTCGGATTGACAGGGTGAGATATGACAAAGCTTGGTACGAATGCCTTGATGTGCAATCATTCATAGAACTAGTACAGTCCAGCAATGGAACTACTCAGAGGGATACAGAAACCAAGCAGGGTGGCAAATCAAATCGTATAAGGTCCTCCATAAGGGGAGAAAAGAAAAACATGTCCATTGTTCCTTCTCATTTAACTCAGACTGATGTTTCCAGTATCAAGGGAGACTCTCGTATATTTTCAAATATGATGTTTTACTTCGTTAATGTGCCTCCATCTCATTCTCTTGAGAGCTTGCACAAAATGATTGCAGAGAATGGGGGAGTTTTCTCAATGAACTTGAATAACTCTGTCACTCATCGTGTGGCGGCAGAGAGCAAGGGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCGTGCGTGTGTGTGCTTGCGTGCGCGCATGTGCACGGCCCCCATTAAGAGTATTTTTTATTGGCTGAATCAAATACCTAATGCAGTTATCTGCAGGGTTTAA 2277 0.4541 MATEQTKFSVMCSLFNWTQRAKSPAKKRAKFRKFLDSFCADRNFFPAIRLVLPNLDRERGSYGLKESVLAISLIDALGMSRDSEDALRLINWRKGGAKTGANAGNFALVATEVLQRRQGTASGGLTIKEVNDLLDQLAASENRAEKTQVLSTFIQKTNAQEMKWIIMIVLKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANAAEAWKKLHGKEVVVECKFDGDRIQIHKNGTEIHFFSRNFLDHSEYAHAMSEIIQQNILVDRCILDGEMLVWDSSLNRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYFGDTSVIHQTLKERHEILRKVVRPLKGRLEILVPNGGLNSHCSSGEPCWSFIAHNVDEVEKFFKETIENRDEGIVIKDLGSKWEPSDRSGKWLKLKPEYIQAGTDLDVLIIGGYYGSGRRGGEVAQFLVGLAERPSPNTHPKRFISFCRVGTGLSDDELDALVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERPDVWVDSPEKSIILSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKAWYECLDVQSFIELVQSSNGTTQRDTETKQGGKSNRIRSSIRGEKKNMSIVPSHLTQTDVSSIKGDSRIFSNMMFYFVNVPPSHSLESLHKMIAENGGVFSMNLNNSVTHRVAAESKGSLSLSLSLSLSLSLSLSLSLSLRACVCLRARMCTAPIKSIFYWLNQIPNAVICRV* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0703 758 Gene3D - 445 606 IPR012340 -
Amo04g0703 758 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 251 259 IPR016059 GO:0003909
Amo04g0703 758 Pfam ATP dependent DNA ligase C terminal region 466 585 IPR012309 GO:0003910|GO:0006281|GO:0006310
Amo04g0703 758 Gene3D DNA ligase/mRNA capping enzyme 221 444 - -
Amo04g0703 758 Coils Coil 127 150 - -
Amo04g0703 758 ProSiteProfiles BRCT domain profile. 650 701 IPR001357 -
Amo04g0703 758 CDD Adenylation_DNA_ligase_IV 215 447 IPR044125 GO:0005524
Amo04g0703 758 SUPERFAMILY Nucleic acid-binding proteins 450 601 IPR012340 -
Amo04g0703 758 Gene3D BRCT domain 631 716 IPR036420 -
Amo04g0703 758 Pfam DNA ligase N terminus 8 187 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Amo04g0703 758 Pfam BRCT domain, a BRCA1 C-terminus domain 652 703 IPR001357 -
Amo04g0703 758 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 62 600 IPR000977 GO:0003910|GO:0005524|GO:0071897
Amo04g0703 758 PANTHER DNA LIGASE 4 3 703 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Amo04g0703 758 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 7 210 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Amo04g0703 758 SUPERFAMILY BRCT domain 654 703 IPR036420 -
Amo04g0703 758 CDD OBF_DNA_ligase_IV 449 593 - -
Amo04g0703 758 ProSiteProfiles ATP-dependent DNA ligase family profile. 330 479 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Amo04g0703 758 Pfam ATP dependent DNA ligase domain 227 442 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Amo04g0703 758 ProSitePatterns ATP-dependent DNA ligase signature 2. 418 442 IPR016059 GO:0003909
Amo04g0703 758 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 186 443 - -
Amo04g0703 758 Gene3D - 1 219 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0703 Amo-Chr4 21176438 21186804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0703 215 602 Core DNA Replication Machinery Family AT1G08130 28.960 5.09e-33 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0703 K10777 - gmx:100816002 1268.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1803 14 37986273 38000222 Amo04g0703 04 21176438 21186804 hybridization