Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0642 CTTCTACTCCAATTCAAGAACCACCTAACCGACCTTGACAACTCACTCTCTTCATGGAACCCTTCAGACACAAGTCACACAACCCCGTGCCATTGGTGGGGTGTCACGTGCCGCAACGCCACCACAACTCCCGTAACCATCACCCCATCCCCCTCTGCCCGCACTCACCACCCTCTCCATCCCCGGCAACTTCATCTCCGACACCATTCCTCAATCCCTCTCTGCCTGCCGCCGTCTCCGACACCTCGACCTCTCCCAAAACACTCTCGTTGGAACCATTCCCTCCTCACCGCCCTCCGCCACCTCGACCTCTCCTTCAACAACCTCTCCGGCGACATTCTCGCTCAACTCAGCCAAACTCTTCACCGCCTCGTGTTACTTGACTTAGTCAACAACTTCCTCAGCAGACCATTCCCGAACTCGTTAACTAACATGACGTCACTCAAGCTTTCTGGTAGAATCCGTGATAGCATGGCCAAATTGATCCAGTTGGGTACTCTTGATTTGAGCTATAATGAAATGTCTGGTGAAATTCTGGGTTGGATTGGCGGTTTGAATATACTCAATGAGCTTAATTTGGCACATAATAGGTTTAGAAACCCTGAGCTATGTGTTAAAGGATTTGGGAAATGTCATAGCTCAAGGGGGAGAAAGTACCGGAGGAACTTAAGAAACAAGAAGAGAAGTTTAAATGTTTCAAAGTGGAGGTTGTTTCATAAGTTGCGCTTTGATGAGTTTGAGATTGTGAAATTGATGAGTGAAGACAATGTGATAGGGAGTGGATCATCTGGGAAGGTTTACAAGGTTGTTCTAAGCAGTGGTGCTGTTGTAGCTGTCAAGAAATTATGGAGAGACACCAAGAATGGAATTGGGATTGTTGGTTCTGAAAATGATGAATTTGATGTTGAAGTTGGAACACTAGGAAAAATAAGGCACAAAAATATAGTAAGGTTGTGGTGTTGCTGGAACAGTGGTGACAGCAGGCTCCTGGTTTATGAATATATGCCGAATGGGAACTTGACCGATATGTCGAAGAGTAACAAGAAAAGCTTGTTGGATTGGCCAACAAGGTACAAGATTGCAATTGATGCTGCTGAGGGGCTTTCTTATATGCATCATGGTATTGTGCCATCCATTGTTCATCGGGATGTAAAATCGAGCAACATATTGCTCGACAGCGAGTTTGGAGCAAAAGTGGCTGATTTTGGAGTTGCCAAAATTGTTAATGGAACTAGCCAAGGGGCAGAGTCCATGTCTGTAATTGCAGGCTCTTATGGTTACATCGCACCAGAATATGCATATACTCTTCGGGTTAACGAAAAGAGTGATATTTACAGCTTTGGTGTTGTCATTTTGGAGTTAGTAACCGAAAGACCTCCTAATCATGCAGATTATGGGAAAAATGATCTGGTAAAATGGGTCTCATCCTTGTTGGAACAGAAAGGAATGGATCATGTGATTGATCCTGCCCTTGATTCAACATACAGGGAGGAAATCAGCAAGGTACTTAGTGTGAGGTTTCTCTGCACAAACGTTCTCCCTATAAACCGCTCTGCAATGTGGTGGGTGGTGAAAATGCTTCGGGAAGCAGCAACGGTTCCCAGATCCCGAAGCGTGAGGGAGGTAACACACTCCCCTTATTTTGATAGAGATTTCTTATGGTGA 1665 0.4541 LLLQFKNHLTDLDNSLSSWNPSDTSHTTPCHWWGVTCRNATTTPVTITPSPSARTHHPLHPRQLHLRHHSSIPLCLPPSPTPRPLPKHSRWNHSLLTALRHLDLSFNNLSGDILAQLSQTLHRLVLLDLVNNFLSRPFPNSLTNMTSLKLSGRIRDSMAKLIQLGTLDLSYNEMSGEILGWIGGLNILNELNLAHNRFRNPELCVKGFGKCHSSRGRKYRRNLRNKKRSLNVSKWRLFHKLRFDEFEIVKLMSEDNVIGSGSSGKVYKVVLSSGAVVAVKKLWRDTKNGIGIVGSENDEFDVEVGTLGKIRHKNIVRLWCCWNSGDSRLLVYEYMPNGNLTDMSKSNKKSLLDWPTRYKIAIDAAEGLSYMHHGIVPSIVHRDVKSSNILLDSEFGAKVADFGVAKIVNGTSQGAESMSVIAGSYGYIAPEYAYTLRVNEKSDIYSFGVVILELVTERPPNHADYGKNDLVKWVSSLLEQKGMDHVIDPALDSTYREEISKVLSVRFLCTNVLPINRSAMWWVVKMLREAATVPRSRSVREVTHSPYFDRDFLW* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0642 554 Pfam Leucine rich repeat N-terminal domain 2 37 IPR013210 -
Amo04g0642 554 SUPERFAMILY L domain-like 2 207 - -
Amo04g0642 554 Gene3D Transferase(Phosphotransferase) domain 1 335 544 - -
Amo04g0642 554 Gene3D Phosphorylase Kinase; domain 1 236 334 - -
Amo04g0642 554 Pfam Protein kinase domain 254 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g0642 554 SUPERFAMILY Protein kinase-like (PK-like) 254 535 IPR011009 -
Amo04g0642 554 ProSiteProfiles Protein kinase domain profile. 252 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g0642 554 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 218 533 - -
Amo04g0642 554 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 96 149 - -
Amo04g0642 554 ProSitePatterns Protein kinases ATP-binding region signature. 258 281 IPR017441 GO:0005524
Amo04g0642 554 ProSitePatterns Serine/Threonine protein kinases active-site signature. 379 391 IPR008271 GO:0004672|GO:0006468
Amo04g0642 554 PANTHER RECEPTOR-LIKE PROTEIN KINASE 5 2 50 - -
Amo04g0642 554 PANTHER RECEPTOR-LIKE PROTEIN KINASE 5 218 533 - -
Amo04g0642 554 PANTHER RECEPTOR-LIKE PROTEIN KINASE 5 150 199 - -
Amo04g0642 554 PANTHER RECEPTOR-LIKE PROTEIN KINASE 5 96 149 - -
Amo04g0642 554 Gene3D Ribonuclease Inhibitor 1 145 IPR032675 -
Amo04g0642 554 Gene3D Ribonuclease Inhibitor 146 207 IPR032675 -
Amo04g0642 554 SMART serkin_6 252 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g0642 554 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 2 50 - -
Amo04g0642 554 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 150 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0642 Amo-Chr4 18390679 18393780 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0642 96 551 Receptor kinase-like Gene Family AT1G28440 46.947 1.45e-135 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Amo04g0642 Pkinase 9.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0642 - - aip:107632602 634.795