Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0637 ATGGAGGGTGGTGGTTCAGAAGAAGAGAAGAGGAAGGAGAAGCCAGCGGAGGTTGAGAACAAGATCAAGCGCAGAATGAAGACTGCTTTTCAGTTGGAAGTTCTGGAGAAAACTTATGTTGGGGAGGCTTACCCTTCAGAAGCAGTGCGAGCTGAGTTATCTGCGAAGCTGGGTCTGTCTGATCGTCAACTGCAAATGTGGTTTTGTCACCGGAGGCTGAAGGATAGGAAATCAGCACCAACAGCGAAGAAGCCCCGAAATGATCACCCGCCTGTGGCACCGGATTCAGTGCCCGAAGGAGAGGGTCTTGAGCAAATGGCAGTGGCTGATGCCATGCATGATTGTGGTTTAGCTTCTGGGTTGAAGCCATTTGGATATTCGGATCCAAGGCAAGTTGTTCCAAATCCTTCGATTTCCTTTCCTAGAACAGGAGCTGGATTGCCAACAATGGAGAACAATAGTTACTATGAACCACATCAGGCCATCGAGGTGCTGCGAGCAATTACGTTTGTGGAGAGACAGTTGGGTCAGCCATTAAGAGAGGATGGACCAATTCTGGGAATGGAATTTGATTCCTTGCCCCCAGGGGCATTTGGTGCCCCAATAGAGGAAGTGACATTGGGACAGCATAGGCATTCTGGAAGCCCTTTCGAGGCAAAAATTTATGATCAACGAAACAAGGGCATTCCAAGGACTCTCCACGAGTATCAGTTTATTCCAGAGCAGCTAACTGTTAGAAATGAGACATTTGACAGAGTTGCCCCCACTATCCATTACAGTTCTCCTGATTGCATTTCACATTCCAGGACTTCACTACCTAGCCAGAAATCTTTGCTTGGTGGGAATGAATCTACACCATATGGATATGGAGTTCAAGATCAGATGCCTGCTTTGAATCATTTGTCTCAGCATGTCAGGCAGAATCATGTTTTGCCTTCTGCTTCTGGACAGATTGAGGGTATTCCACGAAAGAACACATTTGTTGATGTAACAGTTGTTACTCATAGTGGGGTTCACCCAATAACTCTGACTGACACTGCACTAGTGCCATCTGACAACACGGTTATCCATGAGGAGGAACCTTCAAGGTTTCAGAGGAAGCGAATGAATGAAGAAGCTAGAATACGTCGTGAACTTGAAGCTCATGAGAAAAGAGTTAGAAAAGAGATTGGAAAACAGGATATTCTAAGGCGAAAGGTTTGA 1203 0.4613 MEGGGSEEEKRKEKPAEVENKIKRRMKTAFQLEVLEKTYVGEAYPSEAVRAELSAKLGLSDRQLQMWFCHRRLKDRKSAPTAKKPRNDHPPVAPDSVPEGEGLEQMAVADAMHDCGLASGLKPFGYSDPRQVVPNPSISFPRTGAGLPTMENNSYYEPHQAIEVLRAITFVERQLGQPLREDGPILGMEFDSLPPGAFGAPIEEVTLGQHRHSGSPFEAKIYDQRNKGIPRTLHEYQFIPEQLTVRNETFDRVAPTIHYSSPDCISHSRTSLPSQKSLLGGNESTPYGYGVQDQMPALNHLSQHVRQNHVLPSASGQIEGIPRKNTFVDVTVVTHSGVHPITLTDTALVPSDNTVIHEEEPSRFQRKRMNEEARIRRELEAHEKRVRKEIGKQDILRRKV* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0637 400 MobiDBLite consensus disorder prediction 75 99 - -
Amo04g0637 400 CDD homeodomain 21 78 IPR001356 GO:0003677
Amo04g0637 400 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 7 399 - -
Amo04g0637 400 SMART HOX_1 20 82 IPR001356 GO:0003677
Amo04g0637 400 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 7 399 IPR044977 GO:0006357
Amo04g0637 400 Gene3D - 10 92 - -
Amo04g0637 400 SUPERFAMILY Homeodomain-like 19 77 IPR009057 -
Amo04g0637 400 MobiDBLite consensus disorder prediction 75 90 - -
Amo04g0637 400 Pfam Homeodomain 23 77 IPR001356 GO:0003677
Amo04g0637 400 ProSiteProfiles 'Homeobox' domain profile. 18 78 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0637 Amo-Chr4 18360463 18364910 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0637 1 399 Homeobox Transcription Factor Family AT5G44180 39.089 1.34e-64 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Amo04g0637 Homeodomain 4.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0637 - - lja:Lj0g3v0211739.1 501.13