Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0597 ATGATTGTGCTTGAATTAAGTTCAAAAGATCTTACAGTGCGATGTGCATTGTTTGGGGACTATGTTAATCAAGTAAATCATTTCCTTGCCTCTGGGTATGTGGAGCAGCCTGTTGTAGTGATTCAACTTGCTAAAGTCAAGTTCTTTAGGGGTCAAGTAGGGCTTCAAAATGTAATGTATGCCACTCAAATGTTATTTAATCCTGATCTTCCTGAAGTTGTTGAATTTAGGCAGAGTATGGTTGAGCAAGGTATCAACGGTACCCAGCCACTGTTTATTGCAAATGAGGGTAAAGTTGTCTCCTTGGAAGATGATTTCATGCGTTTAACTAGAAAATGCACTATTGAAGAGCTTCAAGATAACAATGAGGAGGGTTCTTTTATCACTTTTGGTACAATCCAAGGTATTATTGAGGATGGAGGTTGGTGGTATTCTGCTTGTGTGTGTGGAAAGGGTATCTATCCTCAAAATGGTGCATATTACTGTGATTTTTGTTTGAAGCACATAACTAATGTGACTCCAAGATTTAAAATTAAAATAACAGTTGAAGATCATAGTGGGGAAGGTATTTTCCTTCTCTTTGATCGTGAGGCATCTTATTTGCTTAAGAAATCATGTGCTGACTTATTTACCGAGGTTCAAAGAGATGCAAGTAAGTTACTGCTGAAGGTTGATACCAAAGGTGTGCCACATGATACATTTTATGGCACTTTTCGAGTTAGGAGAATATGTGATGATCCCACGATTATTGCCATGTTTGAGCTTCTCGATTATGATGCTGATGATGAGTCTACCCCAAAAAAGGCTGATTTACAGAAATCTGTTCCCTCTGGAGAAGGTGATATTGGTGTTAAGAAGGATTCATCAAAGAATTTTATCAAGAGTGAGAAAAAAATACCCAACAATGATACTGTTAGTGATGATCTTTCTGCTGAAATAGATATATTGCTTAGCTCACCAGAAAAAGAAACTCAGGTGCTGTTATATAATATTTTCTTCCTCCTTCCTATGTGTGTTATTTCTAGATAG 1029 0.3712 MIVLELSSKDLTVRCALFGDYVNQVNHFLASGYVEQPVVVIQLAKVKFFRGQVGLQNVMYATQMLFNPDLPEVVEFRQSMVEQGINGTQPLFIANEGKVVSLEDDFMRLTRKCTIEELQDNNEEGSFITFGTIQGIIEDGGWWYSACVCGKGIYPQNGAYYCDFCLKHITNVTPRFKIKITVEDHSGEGIFLLFDREASYLLKKSCADLFTEVQRDASKLLLKVDTKGVPHDTFYGTFRVRRICDDPTIIAMFELLDYDADDESTPKKADLQKSVPSGEGDIGVKKDSSKNFIKSEKKIPNNDTVSDDLSAEIDILLSSPEKETQVLLYNIFFLLPMCVISR* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0597 342 CDD RPA1_DBD_C 115 220 IPR013955 -
Amo04g0597 342 Gene3D - 2 88 IPR012340 -
Amo04g0597 342 Gene3D - 103 240 IPR012340 -
Amo04g0597 342 SUPERFAMILY Nucleic acid-binding proteins 11 80 IPR012340 -
Amo04g0597 342 CDD RPA1_DBD_B_like 10 80 - -
Amo04g0597 342 Pfam Replication factor-A C terminal domain 130 217 IPR013955 -
Amo04g0597 342 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 9 210 - -
Amo04g0597 342 SUPERFAMILY Nucleic acid-binding proteins 112 218 IPR012340 -
Amo04g0597 342 PANTHER REPLICATION FACTOR A 1, RFA1 9 210 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo04g0597 342 MobiDBLite consensus disorder prediction 263 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0597 Amo-Chr4 15713483 15715451 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0597 12 209 Core DNA Replication Machinery Family AT5G08020 25.962 4.27e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0597 - - ahf:112772142 564.688