Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0572 ATGGAGTGGGACAGCAATTCCGATCTCAGCACCGATGACGACGAACCCTTCCTCCGCGGCGGCTCCAACGACGACGAAGATTTCGGTGTCGGACCTATCCCTTTCCCGGTTCTCCAAACCGCGCCGTGCGGCTTCGTGGTTACTGACGCGCTCGAACCTGACCAACCTATCATATACGTCAACACCGTCTTCGAGATGATTACCGGCTACCGTGCTGAGGAAGTTCTCGGTCGCAACTGCCGCTTTTTGCAGTGTCGAGGCCCATTTGCTAAGCGAAGGCATCCACTGGTGGACTCAACAGTAGTAGCAGAAATTAGAAGATGCCTCGAAGAAGGGGTTGAATTTCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTTATGAACAGACTGCGGCTGACACCTATATATGGAGATGATGAGATAACTCATGTCATTGGAATCCAGTTCTTCACAGAGGCAAACATTGATCTTGGTCCTCTTCCAGCTTCAACTAAGGAGTCTACTAAATCAGATCGTTTTCGATCCGTGCTTTCCTCATTGCATCCTCGTGAGGTGGGGGACCGAAATGTGACTCGTGGCCTCTGTGGAATATTGCAATTGAGTGATGAAGTAATTTCTCTCAAGATACTTGCTCGCTTAACTCCAAGAGATATTGCATCAGTTGGTTCTGTTTGTAGGCGTTTGTATGAGCTGACAAGAAATGAAGATCTATGGAGAATGGTGTGCCAAAATGCATGGGGATGTGAGACTACACGTGTTTTAGAGACCGTGCCTGGTGCAAGGAGACTTGGATGGGGTCGGTTGGCAAGGGAGTTGACCACACTTGAAGCAGCAGCATGGAGGAAACTGACCGTTGGAGGTGCTGTTGAACCCTCACGCTGTAATTTCAGCGCATGTGCAGTTGGCAACAGGGTTGTCCTATTTGGTGGTGAAGGAGTTAACATGCAACCTATGAATGACACCTTTGTATTAGATCTTAATTCTAGTAATCCCGAGTGGCAACACGTCCAGGTGAGCTCTCCTCCTCCTGGTCGTTGGGGCCACACACTTTCTTGTGTTAATGGTTCCCGTTTGGTTGTATTTGGAGGGTGTGGAAGGCAGGGCTTACTTAATGATGTCTTTGTTCTTGACCTGGATGCAAAGCCTCCAACTTGGCGAGAAATTTCTGGATTGGCACCTCCACTTCCTAGATCATGGCACAGCTCTTGCACTCTTGATGGTACCAAGTTGATAGTTTCTGGAGGCTGTGCTGATTCTGGAGTCCTCTTGAGTGATACTTTCCTCCTTGATTTGTCAATGGAGAAACCTGTCTGGAGGGAGATACCAGTGACATGGACTCCACCTTCTCGTCTAGGCCACACACTTTCTGTTTATGGTGGTAGGAAAATATTGATGTTTGGGGGTCTGGCCAAGAGTGGACCACTGCGTTTTCGCTCAAGTGATGTATTCACGATGGATTTAAGTGAGGATGAACCGTGCTGGAGGTGTGTAACAGGGAGTGGGATGCCTGGTGCTGGAAACCCTGGGGGAATAGCTCCTCCTCCTAGGCTTGATCATGTGGCTGTTAGTCTTCCTGGTGGGAGAATTCTGATATTTGGTGGGTCCGTTGCAGGACTTCATTCTGCCTCCCAACTTTACATCCTTGATCCAACGGATGAGAAGCCAACATGGAGAATCCTAAATGTACCAGGGCGGCCTCCTAGATTTGCATGGGGACATAGCACATGTGTTGTTGGAGGGACAAGAGCTATTGTGCTGGGTGGCCAAACGGGGGAGGAATGGATGCTAATGAAATTTATAAATTTGCCTCTTCGACATGAAACATATTTCAAAGGTTTTTATTTTTTAATTTTTATTGAATAA 1872 0.4792 MEWDSNSDLSTDDDEPFLRGGSNDDEDFGVGPIPFPVLQTAPCGFVVTDALEPDQPIIYVNTVFEMITGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSTVVAEIRRCLEEGVEFQGELLNFRKDGSPLMNRLRLTPIYGDDEITHVIGIQFFTEANIDLGPLPASTKESTKSDRFRSVLSSLHPREVGDRNVTRGLCGILQLSDEVISLKILARLTPRDIASVGSVCRRLYELTRNEDLWRMVCQNAWGCETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSRLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEDEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLMKFINLPLRHETYFKGFYFLIFIE* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0572 623 Pfam F-box-like 208 246 IPR001810 GO:0005515
Amo04g0572 623 SUPERFAMILY F-box domain 191 261 IPR036047 GO:0005515
Amo04g0572 623 TIGRFAM sensory_box: PAS domain S-box protein 54 150 IPR000014 -
Amo04g0572 623 PANTHER ADAGIO PROTEIN 1-LIKE 1 607 - -
Amo04g0572 623 ProSiteProfiles PAS repeat profile. 37 112 IPR000014 -
Amo04g0572 623 Pfam Galactose oxidase, central domain 296 346 - -
Amo04g0572 623 Pfam PAS domain 42 151 IPR000014 -
Amo04g0572 623 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 1 607 - -
Amo04g0572 623 Gene3D - 198 244 - -
Amo04g0572 623 MobiDBLite consensus disorder prediction 1 23 - -
Amo04g0572 623 Pfam Kelch motif 453 504 IPR011498 GO:0005515
Amo04g0572 623 Pfam Kelch motif 520 567 IPR011498 GO:0005515
Amo04g0572 623 Gene3D - 274 475 IPR015915 GO:0005515
Amo04g0572 623 SUPERFAMILY Galactose oxidase, central domain 282 595 IPR011043 -
Amo04g0572 623 CDD PAS 41 143 IPR000014 -
Amo04g0572 623 Gene3D PAS domain 35 162 - -
Amo04g0572 623 Gene3D - 476 607 IPR015915 GO:0005515
Amo04g0572 623 Pfam Galactose oxidase, central domain 358 407 - -
Amo04g0572 623 SUPERFAMILY PYP-like sensor domain (PAS domain) 41 151 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0572 Amo-Chr4 14965164 14970298 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0572 37 152 AGC Kinase Gene Family AT5G58140 34.188 6.31e-14 73.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1710 14 33392781 33398114 Amo04g0572 04 14965164 14970298 hybridization