Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0571 ATGTCAAGCTCAGGAGGACTAGATCGACCGGCTTTAGTAATGATCATCGTGGGTGGGATTGTGATCTTTATATCACTTTGTTTAGCAATATGTCGCGGAAGGATTAAGATTGTAGGTATAAAAGTGATTCGGGATGCACAATTTTTAACTCACACTATGGATAAATTTCTGAATGACATTGAAAAGGACAAGCCATTTAGGTTCACTACTCAACAGTTAAAGATTGTAACTGATAACTTCTCTTATTTATTGGGATCGGGAGGTTTTGGTTCGGTATACAAAGGAGTTTTTAGTGACGATACCATTGTAGCTGTGAAGGTTCTGTTTAGAAGTTCTGACAAAGGAATCCAAGAACAGTTTATGGCTGAAATTGGAACTTTAGGTAAAGTTCATCATTTCAACTTAGTTAAACTATTCGGATTTTGTGTTGAAAAGAACTTGATTGCAATAGTTTATGAGTACATGGGAAATGGCTCTCTTGACAAGTATTTATTCAAACAAGTTAAGGCTTTGGAATTTGAAAAGCTTCATGAGATTGCAATTGGAACAGCAAGAGGCATTGCTTATTTGCACGAAGAGTGTCAACAAAGAATAATTCACTATGATATTAAGCCGGCGAATATTCTCTTGGACATGAATTTCAATCCTAAGGTCGCGGATTTCGGATTGGCCAAGCTCTGCAACAGGGATAATACTCATATATCCATGACTGGAGGCAGGGGAACCCCCGGCTATGCTGCGCCGGAGCTTTGGATGCCTTTCCCTGTGACTCACAAATGTGATGTTTATAGCTTTGGGATGTTGTTGTTTGAAATCATTGGTGGGAGAAGAAATGTTGATACTAATGTTCCGGAAAGCCAAGAGTGGTTTCCAATGTGGGTTTGGAAAAAAATTGATGCTGGAGAGTTACAGAATTCAACATTAGTGTCTGAATTATTGTTGGAGAAACATAAGGAGATGGTAGAAAGAATGATTAAGGTAGCTTTGTGGTGTGTTCAGTATAGGCCAGAATCAAGGCCTATGATGAGTGCTGTTGTGAAAATGTTGGAAGGCTCTGAAGAAATTCCACAACCTTTGAACCCATTTCAATACTTGATGGACAATGGTTTTGCTACTCTTCCACAGCAATATTCATCAAATAATTGCAATGGTACAACTGCAACTACAAGTAGTTATTGTGACTCTTCTGTGATTGATGTAGACTCCAATATTGTAACTGCTGATCCAATTTAG 1233 0.3836 MSSSGGLDRPALVMIIVGGIVIFISLCLAICRGRIKIVGIKVIRDAQFLTHTMDKFLNDIEKDKPFRFTTQQLKIVTDNFSYLLGSGGFGSVYKGVFSDDTIVAVKVLFRSSDKGIQEQFMAEIGTLGKVHHFNLVKLFGFCVEKNLIAIVYEYMGNGSLDKYLFKQVKALEFEKLHEIAIGTARGIAYLHEECQQRIIHYDIKPANILLDMNFNPKVADFGLAKLCNRDNTHISMTGGRGTPGYAAPELWMPFPVTHKCDVYSFGMLLFEIIGGRRNVDTNVPESQEWFPMWVWKKIDAGELQNSTLVSELLLEKHKEMVERMIKVALWCVQYRPESRPMMSAVVKMLEGSEEIPQPLNPFQYLMDNGFATLPQQYSSNNCNGTTATTSSYCDSSVIDVDSNIVTADPI* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0571 410 ProSiteProfiles Protein kinase domain profile. 78 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g0571 410 Gene3D Transferase(Phosphotransferase) domain 1 155 358 - -
Amo04g0571 410 ProSitePatterns Protein kinases ATP-binding region signature. 84 106 IPR017441 GO:0005524
Amo04g0571 410 SUPERFAMILY Protein kinase-like (PK-like) 59 350 IPR011009 -
Amo04g0571 410 Pfam Protein tyrosine and serine/threonine kinase 83 349 IPR001245 GO:0004672|GO:0006468
Amo04g0571 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Amo04g0571 410 PANTHER PUTATIVE-RELATED 15 371 - -
Amo04g0571 410 Gene3D Phosphorylase Kinase; domain 1 51 154 - -
Amo04g0571 410 PANTHER RUST RESISTANCE KINASE LR10-RELATED 15 371 IPR045874 GO:0004672
Amo04g0571 410 SMART serkin_6 78 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g0571 410 CDD STKc_IRAK 84 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0571 Amo-Chr4 14954173 14956129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0571 67 364 Receptor kinase-like Gene Family AT5G38280 42.810 1.30e-80 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Amo04g0571 PK_Tyr_Ser-Thr 2.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0571 - - gmx:100816921 535.798