Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0558 ATGGTAGACACGCGAGACTCAAAATCTCGTGCTAAAGAGCGTGGAGGGATTGGCGACTTACCCATTCAATTACTTTTGCACCGGACGTTCCCCATAGGGGGCTCGAATCCTATTTTTCCCATTAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAACTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGATCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACTCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTAAATAG 396 0.4646 MVDTRDSKSRAKERGGIGDLPIQLLLHRTFPIGGSNPIFPINCSATVGQVGNVGVNQKTLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0558 131 ProSitePatterns Ribosomal protein L2 signature. 73 84 IPR022671 GO:0003735|GO:0005840|GO:0006412
Amo04g0558 131 Gene3D Ribosomal protein L2, domain 3 51 130 IPR014726 -
Amo04g0558 131 SUPERFAMILY Translation proteins SH3-like domain 37 128 IPR008991 -
Amo04g0558 131 PANTHER RIBOSOMAL PROTEIN L2 37 129 IPR002171 GO:0003735|GO:0005840|GO:0006412
Amo04g0558 131 Pfam Ribosomal Proteins L2, C-terminal domain 38 106 IPR022669 GO:0003735|GO:0005840|GO:0006412
Amo04g0558 131 SMART Ribosomal_L2_C_2 12 108 IPR022669 GO:0003735|GO:0005840|GO:0006412
Amo04g0558 131 MobiDBLite consensus disorder prediction 115 131 - -
Amo04g0558 131 MobiDBLite consensus disorder prediction 80 131 - -
Amo04g0558 131 PANTHER 50S RIBOSOMAL PROTEIN L2, CHLOROPLASTIC 37 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0558 Amo-Chr4 14452622 14453593 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0558 34 90 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 48.485 3.62e-11 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0558 K02886 - zju:27963891 186.422