Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0496 ATGGAGATGAGCTGCCAAGAAAATGTTGGTGGTAGTGATATTCCTGCATGTTCTACAGCAGGGAATATTTCACATCAAGACCAGCGTTTCAGTAGCTATGTGCAGCAGCCTGCTTTTGTGAGTGGATGGATGTATGTGAATGAACAAGGGCAAATGTGTGGTCCATATATTCAGGAGCAACTATATGAGGGTTTAACTACTGGTTTCTTGCCATTTGAGCTTCCTGTCTATCCTATGATTAATGGCACAATAATGAACCCTGTGCCACTGAATTACTTCAAGCAGTTTCCTGACCATGTCTCTACTGGGTTTGCATATCTGAATTTGGGTTTCTCTGGCTCAGGGGTTCATACAAATGGTCCCTCCTCATCTATGGATATGGCAATATATGGGCAGAATCAGTCTCTTGACAATGCTGCTCCTTTGGCTGTTAACTCTGGCTCGCAGTCAGTTCCGTATTCACATGGCAATTACTGCATTAATGAACCTAACCACCAATGTTCAAAGTCAGAGTTGTTCAACAGTATGATATCTTCTCAGATGTTAGGTGAAGAACGTTGTTGGCTTTATGAGGATGAAAAGGGCATGAAACACGGTCCACATTCTATTTCAGAATTGATTTCCTGGCATCATCATGGATATCTTCAAGACTCGTCAATGATATCTCATTTTGGCAATAAGTATGGTTCCTTTCTGCTAGTTGCTGCTGTAAATGCTCTGAAAGGGGATACATCTGGAACCATTTGTAGATCAGGTTCCAACAACAATGAGCTTGGTGGTACGGTAAACTTAATCTGTGAAATATCTGAGGACATTTCTTCCCAATTGCACTTGGGTGTCATGAAAMCTGCCCGCAGAGTTGTGCTCGATGGGGTTATAAGTGATATTATTGCAGAATTTTTTACTGAAAAGAAACACAAGAGGCAGAAGCTTGATTCAACTAACCTGGCTTCTGAGACCTCRGTGGTTGACAGCAAAAGGTCAAATGTTGCTGTGGAGATTAGTAAAGATACTGCTGTTCCGAGTGAGCATGCATCTTCCCATATTGCAGATGATCAGACTTGTCTTGAAATTTCTAGACCATCTTCAACAAGTSTTAAATCGGTTGGAAGTGTTGAGAACTTTTGGTGGTCMTATGCTGTTGTACGTAAAGTACTTGTTGATTATTGCATGCAAGTCACGTGGAATGCTGTATTTTTTGACCCTCTAGCAGAGTACTTATGTTCCTGGAGGAAAAAGAAACTTTGGTCTCATCCTAATCTTCAAATATTTGTTAATGGTTGTGGAGAATATGATGGAAAGATTAAATCTGAAGCTTTGCTTCTTGGGACAGGTTGTTCTAAATACCCTACCGATGGCTGTAATCAGTTTGGAGTGCTGACAACAGGAACAGATTCTCATTCTAAGTTACCTTCTTTATCTTCTAATGTACCCAAAGATGGAAATTTAATGGAAGGTCAAAGAGTTTCATGCACTTATAGTAACTCCAAAAATTTGACATGCATTATTGAAAGTGTGGAGAATGAGCTTCACTTCTCTTCAAAGGTGTCTTTAGCTGAATACTTTCGAAGTTTTGTTGAAAAGGAAGTGAACAAAATAATTCATTCCCCTCATGAAGACAAATTGAGTAAGGTTGCTGTTAGTGTCTCTGGTTTCTCAGAACTACACACTGGTGAAACTCCTATGAAGGAAATTCTAAATGACAAGTTAGTAGCTACTGTTAAGGCTGAAGATTCAGTTTGTGAGCCTTCATTAGCAAATCATATGTCTAATGTATTCTCGAATGCATTTGAGGAGTTGTYTGGAGGTGTAGAAGTAGTTGATGAAGGGGAAATTGGTGAACTTCCACCTGGATTTGAAGAGAACTRGCACACAATTTTCCCACCACCGAATTTGAAGATTCGACCTTCAAGGGTAGCTGAATGTAATCCTAAGATTACAGAATATGTTGCAACTGCACTGTGCCGACAAAAGTTGCATAATGAAGTCCTAGAAGAGTGGAAATCCGCTTTTTTTTATCCTACATTGAATCAAGCTTTTATGTCTAATAAGAAACGCAGTCATTCTGGTATTCATGAGAAAGGAAAAGCAAAGAAAGCAAGGAAGGAACCTTTAAATGATGCTACTTCTGGACTGGGAAAGATGAAAGAAGGAGCAAAAGGTTCTTCTGGAGTTCCTCTAGTTAATGGAAAGTATACATACCACCGCAAGAAACTGTCACACAAAGAGTTGTGTTCCTCTCAATCTGCTTCAGTGGATGATTCTAGGCCAGGAAAGCAGAATGTGTGTAAGTTAAGGAATTATGTTTTGGGAGATTTGAATGAAACTGCAGAAGTCAAAATAGCTGCTAAGCGTGGAAAGGCTAGTGTGGTTAAAGGGAAGAAAGATAAATCTAATAAGAGCAGGTCATCTATCATTGTCAATGGTAGCACAGATGGTGATCGATTGTCCTTGAAGAATAAAACTAGTTCGAAAGCATTGAAACTTTCACYTACRGATGGTGTTGTGGATGCCGTAAAATCTAATGAAAGGAGGCTTTCTGCGTCAACAAATAATAGTGTTGGAATGAAGAAGGTGGTTAAAAGCAATYCTGAGGATGTCCTAAAATCAAATGAAAAGAAGCTTTCAGCATCAACAAATAATAGTGTTTCCATGAAGAAGGTGGCTAAAAGCAATTGCAGTGATGGCACCATTAAGGGGAAGYCTGCTGGTCATTGCTCCAAACAGAGACCAAGTGCAAATAAAATGTCGAAACAAAAAAGGAAACATTCAACAGATGGTATGCCATCCTTACATCCTGCCAAGTCTTTGAAAATTTCAAACGATGGTGCAAAGCATGGAGCAAGCAAACATGCTACTYTTGCAAGGAGGAATTCTGCCAAATCCAAGCCATTGAATMTATBTCCTAGATCTGATGGATGTGCTAGGACTTCCATTGATGGGTGGGAATGGCATAGATGGTCTCAAAGTGCTACTCCTGCATATAGAGCACGTGTCAGGGGKATTGCCTGTATACAAAACAAGTGCATAGATTCAGATAATAATTTATTGCAGCTATCYAATAATAAGGGTCTTTCTGCAAGAACAAATAGGATGAAATTGCGCAACCTTCTTGCTGCTGCCGAGGGTGCAGATCTTCTGAAAGTGCCTCAATTGAAGGCAAGGAAAAAACGATTACGTTTTCAAAGGAGCAAGATACATGACTGGGGTCTTGTTGCAATGGAGCCSATAGAGGCAGAGGACTTCGTGATTGAATATGTTGGAGAACTAATTCGTCCTCGGATATCTGATATCCGTGAACGTCAGTATGAGAAGATGGGAATTGGAAGCAGTTACCTTTTRAGACTTGATGATGGTTATGTGGTTGATGCTACAAAGAGAGGTGGGATTGCAAGATTTATTAACCATTCTTGTGAGGTGGATCCTTATCTTCCTGAGTCATTGATCATGCTCCCATTGGATATCATTSTGAAGATTTGA 3480 0.3974 MEMSCQENVGGSDIPACSTAGNISHQDQRFSSYVQQPAFVSGWMYVNEQGQMCGPYIQEQLYEGLTTGFLPFELPVYPMINGTIMNPVPLNYFKQFPDHVSTGFAYLNLGFSGSGVHTNGPSSSMDMAIYGQNQSLDNAAPLAVNSGSQSVPYSHGNYCINEPNHQCSKSELFNSMISSQMLGEERCWLYEDEKGMKHGPHSISELISWHHHGYLQDSSMISHFGNKYGSFLLVAAVNALKGDTSGTICRSGSNNNELGGTVNLICEISEDISSQLHLGVMKXARRVVLDGVISDIIAEFFTEKKHKRQKLDSTNLASETSVVDSKRSNVAVEISKDTAVPSEHASSHIADDQTCLEISRPSSTSXKSVGSVENFWWSYAVVRKVLVDYCMQVTWNAVFFDPLAEYLCSWRKKKLWSHPNLQIFVNGCGEYDGKIKSEALLLGTGCSKYPTDGCNQFGVLTTGTDSHSKLPSLSSNVPKDGNLMEGQRVSCTYSNSKNLTCIIESVENELHFSSKVSLAEYFRSFVEKEVNKIIHSPHEDKLSKVAVSVSGFSELHTGETPMKEILNDKLVATVKAEDSVCEPSLANHMSNVFSNAFEELXGGVEVVDEGEIGELPPGFEENXHTIFPPPNLKIRPSRVAECNPKITEYVATALCRQKLHNEVLEEWKSAFFYPTLNQAFMSNKKRSHSGIHEKGKAKKARKEPLNDATSGLGKMKEGAKGSSGVPLVNGKYTYHRKKLSHKELCSSQSASVDDSRPGKQNVCKLRNYVLGDLNETAEVKIAAKRGKASVVKGKKDKSNKSRSSIIVNGSTDGDRLSLKNKTSSKALKLSXTDGVVDAVKSNERRLSASTNNSVGMKKVVKSNXEDVLKSNEKKLSASTNNSVSMKKVAKSNCSDGTIKGKXAGHCSKQRPSANKMSKQKRKHSTDGMPSLHPAKSLKISNDGAKHGASKHATXARRNSAKSKPLNXXPRSDGCARTSIDGWEWHRWSQSATPAYRARVRGIACIQNKCIDSDNNLLQLSNNKGLSARTNRMKLRNLLAAAEGADLLKVPQLKARKKRLRFQRSKIHDWGLVAMEPIEAEDFVIEYVGELIRPRISDIRERQYEKMGIGSSYLLRLDDGYVVDATKRGGIARFINHSCEVDPYLPESLIMLPLDIIXKI* 1160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0496 1159 Gene3D - 174 255 IPR035445 -
Amo04g0496 1159 SUPERFAMILY SET domain 1052 1139 IPR046341 -
Amo04g0496 1159 SUPERFAMILY GYF domain 180 237 IPR035445 -
Amo04g0496 1159 ProSiteProfiles GYF domain profile. 185 241 IPR003169 GO:0005515
Amo04g0496 1159 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 1 1139 IPR044570 GO:0042800|GO:0051568
Amo04g0496 1159 SMART set_7 1057 1155 IPR001214 GO:0005515
Amo04g0496 1159 Pfam SET domain 1069 1139 IPR001214 GO:0005515
Amo04g0496 1159 MobiDBLite consensus disorder prediction 893 972 - -
Amo04g0496 1159 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 1 1139 - -
Amo04g0496 1159 MobiDBLite consensus disorder prediction 687 724 - -
Amo04g0496 1159 Gene3D SET domain 1003 1143 IPR046341 -
Amo04g0496 1159 ProSiteProfiles SET domain profile. 1057 1159 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0496 Amo-Chr4 10771452 10778764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0496 1056 1138 C2H2 Transcription Factor Family AT2G23740 37.113 1.05e-08 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo04g0496 SET 4.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0496 - - aip:107636228 2198.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1635 14 30325972 30335147 Amo04g0496 04 10771452 10778764 hybridization