Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0495 ATGGATGATGGGTTGACTGCTTTTTATAGTTTTCTCTATTGTGTTTGGTGGTTGAGCCAATGCCTCCTCTATTTGATTCTATCTCTAAGATCCACCCTCCAAGGGAGAACTTGGATTGTTCCTTCATTTGTAAATCATGATGTTGAAAATTCAATAGAAATTATTCTTGTTGATGAAGATTTTAAAGAGAATATTATTGAGGGTCAAACATACCGAATGTCATATTTTAGTGTTGTTCCAAACCAAGGCAATTATAGGACAGCAGAACATGAGTTTAAGTTGGTTTTTCTTAACCGTACAACTGTTATTTCTATCCCAGATGATGCTATCCCCAAGACATGTTTCAGTTTCTGTCCATTTGATGAGCTCTTGAAAATAATTGAAGATTATATAGATGTTATTGGTTTGCTAACTTCTGTTGGTGAAGAGAAAGAATATGTGAAAGATGGCAAAGTGATAAAGATGATCGTTTTTAAGTTATCTTCAAAAGAGTTGACAATACGTTATGCTATGTTTGGGGAGTACGTGGATGAATTGCATCGTTTCTTTGATTCTGCTGGGTGTTTTGTAGGACAAGTTGGTCTCCAAAATGTTATGCATGCTATTCGCCTGTTCTTTAATCCAGATTTGGCTGAAGTTGTTGATTTCAAAAACAGTATGGTTGACCAAGGTATCAATGGAATACAACCATTATTTATTGCTAATGAGGGCAAGGGTGTTTCATTGGAAAATGATTTTATGCGGCTTATTAGGAGATGCACTATTGAGGAACTCCATGATAACATGAGATATAGGATCAAAATAGCGGTTGAGGATGATAATGGACATAGTGTATTTGTCTTATTTGATCGTGAGGTTGGTTACTTACTAAAAAAATCATGTGCTGATCTGTTTGGAAAAGTTCAAAAGGATGCAAGTATAGATACCAAGAGTATTGGTATAGACAAATATTTTAGAACTTTTCGTGTGAGAAAAGTTTGTGATGATGCTGCTATTATTTCCATGTTTAAGTTGCCTAACTATGATACGGATGATGAACGCACTCCATTGAAGGATGGTTATTTGGGAAATATCCCTTCAAGTGACCATGAATATATTGTTGGTAAGAAGGATCCGTGTGAAGTGCTGGATGAGGGTATCACTTCTGATGGGAATTGTTCCAATATGAAGGCAAACTGCAAGCCTTTGATTGATTTTCTTGGTGAAAAGGGTGTTGAAGTTTCTGGATTGGATGATATAAGTAGTGAAGCTGATATTGTGAAAGAGAAAGGGAAAATTGTTAATGATAGTGTAATTGCTGATAGAGAGTGCAGCCTCAAAATTGAGGTCCTCTTGAATTCTCCTCTTGTGGAAACTACGGTAAGAGTACTTTCTGCTGTTCTTGATGGGTCCCCTATTCATGTGATCAAGAAAGAGACTGTTTACAATCCTCCTAGGGGTGGAAAGGTTAAGAGAAATCTGAAAAAAGCTTTTGATGATGTTGCTGATGAGGAGCTTGGCCCAACTTCCAAGATTCTCAAGGACCGTGATCTTTGA 1536 0.3672 MDDGLTAFYSFLYCVWWLSQCLLYLILSLRSTLQGRTWIVPSFVNHDVENSIEIILVDEDFKENIIEGQTYRMSYFSVVPNQGNYRTAEHEFKLVFLNRTTVISIPDDAIPKTCFSFCPFDELLKIIEDYIDVIGLLTSVGEEKEYVKDGKVIKMIVFKLSSKELTIRYAMFGEYVDELHRFFDSAGCFVGQVGLQNVMHAIRLFFNPDLAEVVDFKNSMVDQGINGIQPLFIANEGKGVSLENDFMRLIRRCTIEELHDNMRYRIKIAVEDDNGHSVFVLFDREVGYLLKKSCADLFGKVQKDASIDTKSIGIDKYFRTFRVRKVCDDAAIISMFKLPNYDTDDERTPLKDGYLGNIPSSDHEYIVGKKDPCEVLDEGITSDGNCSNMKANCKPLIDFLGEKGVEVSGLDDISSEADIVKEKGKIVNDSVIADRECSLKIEVLLNSPLVETTVRVLSAVLDGSPIHVIKKETVYNPPRGGKVKRNLKKAFDDVADEELGPTSKILKDRDL* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0495 511 SUPERFAMILY Nucleic acid-binding proteins 115 220 IPR012340 -
Amo04g0495 511 Gene3D - 28 107 IPR012340 -
Amo04g0495 511 Pfam Domain of unknown function DUF223 61 124 IPR003871 -
Amo04g0495 511 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 36 298 - -
Amo04g0495 511 PANTHER REPLICATION FACTOR A 1, RFA1 36 298 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo04g0495 511 SUPERFAMILY Nucleic acid-binding proteins 40 108 IPR012340 -
Amo04g0495 511 Gene3D - 235 326 IPR012340 -
Amo04g0495 511 CDD RPA1_DBD_A_like 36 102 - -
Amo04g0495 511 Gene3D - 109 226 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0495 Amo-Chr4 10745098 10750529 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0495 68 213 Core DNA Replication Machinery Family AT2G06510 26.667 4.67e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0495 - - aip:107647213 455.292