Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0489 ATGGCGCCGAGTAGAAGCAGAGATGTGCAGCTWACTTCGATCGCCGGCGCCGMAGACGATGACGCCGGCGACTTGGAGGAGGTGCGGCTACTGGACTCCTACGATTCCCGCGACGGAATTGACGACGGCGGAATGAGGCGGATTCAGGTGAGGGTCACCGGGATGACCTGTGCTGCATGCTCCACCTCCGTCGAATCGGCTCTCTGCGCCGTCAACGGTGTAATTACCGCCTCCGTTGCTCTTCTTCAGAACAAAGCCGATGTAGTTTTCAACCCAGCTCTGGTCAAGGATGAAGACATAAAAAATGCAATTGAAGATGCGGGGTTTGAAGCAGAAATATTACCAGAACCCAGCACAACTGGAAAGATGCCACATGGAACACTTGTGGGACAATTCATAATCGGAGGTATGACATGTGCGGCCTGCGTAAATTCYRTGGAAGGCATTTTGAGAGATCTTCCAGGGRTCAAGAGGGCTGTAGTGGCTTTGGCTACTTCGTTAGGCGAAGTTGAATATGATCCGAGTGTAATAGGTAAAGATGATATAGTCAATGCAATTGAAGATGCTGGTTTTGAAGGTTCATTTGTSCAGAGCAGTGAACAGGATAAAGTAGTTTTTGAGGTGGTTGGTGTGTATAGTCTGATTGACACTCAAGTTTTAGAAGGTGTGCTTGGCAGCATCAAAGGAGTAAGGCAGTTTCGTTTTGATCAGATATCAGGTCAATTGGATATTGTCTTTGATCCTGAAGTTCTCAGTCCTAGATACTTAGTTGATGGGATTGAAGGGAGAAGCAGTGGAAAATTTAAATTACGTGTTAGAAACCCTTATACAAGGATGGCTTCTAAAGATGTTGAGGAGAGCTCAGCTATGTTTCGGCTCTTCGTCTCTAGTTTGCTTCTTAGTATTCCTCTCTTCTTCATGAAGCTAGTATGTCCTCATATACCAATGATATATTCTTTACTACTCCGGAGATGCGGGCCTTTCCTTATGGGTGATTGGTTGAAGTGGGGATTGGTGAGTATCATTCAATTTGTWATTGGGAAGCGTTTCTACATTGCTGCTRCCAGAGCTCTTAAAAAYGGTTCGACAAACATGGATGTTCTAGTTGCYGTAGGAACTACTGCATCTTATRCTTATTCTGTTTGTGCTCTTCTATATGGTGCTCTTACTGGATTTAGGGCTCCAGTATACTTTGAAACAAGTGCCATGCTCATAACATTTGTATTGTTGGGCAAGTATTTGGAATGCCTTGCCAAGGGGAAGACATCAGATGCCATCAAGAAGTTAGTAGAACTTGCTCCTGCAACAGCTTTATTGATTATCAAAGATAAAGGTGGTAGATCTATTGAAGAAAAGGAAATTGATTCCTTGCTCRTTCARCCTGGTGACATGCTAAAAGTTWTYCCTGGTACAAAGATTCCTGCYGATGGAATCGTTACTTGGGGATCAAGTTATGTCAATGAAAGCATGGTAACAGGGGAAGCTGTACCTGTTCAGAAGGAGGTGAATGCATCGGTGATTGGTGGTACAATAAATTTGCATGGTGTCCTTCACATTCAAGCTACCAAAGTAGGATCTGATACAGTTTTGAGTCAGATAATTAGTTTAGTTGAGACAGCACAGATGTCCAAAGCTCCAATTCAGAAATTTGCTGATTATGTTGCAAGTATATTTGTTCCTACAGTTGTTTCTTTGGCATTATTGACATTTTTCTCTTGGTATGGTGCTGGGTCTATTGGAGCTTATCCTGAGGAATGGCTGCCGGAAAATGGAAATCACTTTGTTTTTGCTCTAATGTTCTCAATAGCTGTCGTAGTGATTGCATGTCCCTGTGCGCTTGGCTTGGCAACACCAACAGCTGTCATGGTGGCGACAGGGGTTGGGGCTAACAATGGAGTGCTAATTAAAGGAGGAGATGCTTTGGAAAGAGCTCAGATGGTGAAGTATGTGATATTTGATAAAACAGGAACTCTGACACAAGGAAAAGCTAGTGTTACTACTGCCAAGACATTCACAGGAATGCAACGGGGAGAATTTCTCAGATTGGTGGCTTCTGCTGAGGCTAGCAGTGAACATCCACTGGCACAAGCAATAGTAGAATATGCACGTCATTTTCATTTCTTTGATGACTCTTCTGCTTCTGATGGTACCCAAAATGGTGCCAAGGAGTTGAAATCTGGGTGGCTTTTTGATGTCTCAGATTTCATTGCTCTTCCTGGAAGAGGTGTTCAATGCCTTATAGATGGGAAACCTATTTTGGTTGGTAACAGGAAGCTCATGGCAGAAAGTGGCATAGATATCTCAGATGAAGTGGAAAATTTTGTGGTAGAGCTGGAAGAAAGTGCAAGGACAGGGGTACTAGTAGCATATGATGATATAATAATTGGAGTCTTGGGGATTTCAGATCCACTAAAGAGAGAAGCATCTGTAGTTATAGAAGGRCTCCAGAAAATGGGTGTCAGACCTGTTATGGTTACAGGAGATAACCGGAGAACTGCTCGCGCTGTGGCCAAGGAGGTTGGCATCCAAGATGTTAGGGCAGAGGTTATGCCTGCTGGAAAAGCTGATGTTGTTCAATCATTCCAAAAAGACGGRAGCATAGTAGCAATGGTTGGTGATGGTATCAATGACTCTCCTGCATTAGCTGCTGCTGATGTTGGTATGGCAATAGGGGCTGGAACAGATATTGCAATAGAAGCTGCTGATTACGTGTTGATGCGAAACAACYTGGAAGACGTGATCACCGCCATYGATCTTTCCCGGAAGACCTTCTCCCGTATTCGGTTGAACTATGTATTTGCAATKGTGTATAATGTTGTGGCTATACCAGTTGCTGCTGGGGCTTTGTATCCTTCACTGAGGATCAAGCTGCCACCATGGGTTGCTGGTGCATGCATGGCTCTATCTTCTGTAAGTGTTGTATGTTCTTCTTTGCTTCTCAGAAGATATAGAAGACCCAGACTTACTCAAATACTTGAAATAGTTGTAGAGTAA 2994 0.4355 MAPSRSRDVQLTSIAGAXDDDAGDLEEVRLLDSYDSRDGIDDGGMRRIQVRVTGMTCAACSTSVESALCAVNGVITASVALLQNKADVVFNPALVKDEDIKNAIEDAGFEAEILPEPSTTGKMPHGTLVGQFIIGGMTCAACVNSXEGILRDLPGXKRAVVALATSLGEVEYDPSVIGKDDIVNAIEDAGFEGSFVQSSEQDKVVFEVVGVYSLIDTQVLEGVLGSIKGVRQFRFDQISGQLDIVFDPEVLSPRYLVDGIEGRSSGKFKLRVRNPYTRMASKDVEESSAMFRLFVSSLLLSIPLFFMKLVCPHIPMIYSLLLRRCGPFLMGDWLKWGLVSIIQFVIGKRFYIAAXRALKNGSTNMDVLVAVGTTASYXYSVCALLYGALTGFRAPVYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLIIKDKGGRSIEEKEIDSLLXQPGDMLKVXPGTKIPADGIVTWGSSYVNESMVTGEAVPVQKEVNASVIGGTINLHGVLHIQATKVGSDTVLSQIISLVETAQMSKAPIQKFADYVASIFVPTVVSLALLTFFSWYGAGSIGAYPEEWLPENGNHFVFALMFSIAVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQMVKYVIFDKTGTLTQGKASVTTAKTFTGMQRGEFLRLVASAEASSEHPLAQAIVEYARHFHFFDDSSASDGTQNGAKELKSGWLFDVSDFIALPGRGVQCLIDGKPILVGNRKLMAESGIDISDEVENFVVELEESARTGVLVAYDDIIIGVLGISDPLKREASVVIEGLQKMGVRPVMVTGDNRRTARAVAKEVGIQDVRAEVMPAGKADVVQSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNNLEDVITAIDLSRKTFSRIRLNYVFAXVYNVVAIPVAAGALYPSLRIKLPPWVAGACMALSSVSVVCSSLLLRRYRRPRLTQILEIVVE* 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0489 997 ProSitePatterns Heavy-metal-associated domain. 52 82 IPR017969 GO:0046872
Amo04g0489 997 ProSiteProfiles Heavy-metal-associated domain profile. 129 195 IPR006121 GO:0046872
Amo04g0489 997 Pfam Heavy-metal-associated domain 132 192 IPR006121 GO:0046872
Amo04g0489 997 Pfam Heavy-metal-associated domain 50 110 IPR006121 GO:0046872
Amo04g0489 997 ProSiteProfiles Heavy-metal-associated domain profile. 47 113 IPR006121 GO:0046872
Amo04g0489 997 CDD HMA 49 112 IPR006121 GO:0046872
Amo04g0489 997 Gene3D - 658 750 IPR023299 GO:0000166
Amo04g0489 997 Gene3D - 751 802 IPR023299 GO:0000166
Amo04g0489 997 ProSiteProfiles Heavy-metal-associated domain profile. 203 261 IPR006121 GO:0046872
Amo04g0489 997 SUPERFAMILY HMA, heavy metal-associated domain 43 117 IPR036163 GO:0046872
Amo04g0489 997 PANTHER HEAVY METAL P-TYPE ATPASE 7 990 - -
Amo04g0489 997 CDD P-type_ATPase_Cu-like 292 967 - -
Amo04g0489 997 TIGRFAM TIGR00003: copper ion binding protein 48 111 IPR006122 GO:0005507
Amo04g0489 997 Gene3D - 618 928 IPR023214 -
Amo04g0489 997 Pfam haloacid dehalogenase-like hydrolase 647 885 - -
Amo04g0489 997 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 365 980 IPR027256 GO:0006812|GO:0016021|GO:0019829
Amo04g0489 997 Pfam E1-E2 ATPase 432 630 - -
Amo04g0489 997 SUPERFAMILY Calcium ATPase, transmembrane domain M 391 957 IPR023298 -
Amo04g0489 997 SFLD p-type atpase 633 923 IPR044492 -
Amo04g0489 997 PRINTS Copper-transporting ATPase 1 signature 73 96 - -
Amo04g0489 997 PRINTS Copper-transporting ATPase 1 signature 47 72 - -
Amo04g0489 997 PRINTS Copper-transporting ATPase 1 signature 102 122 - -
Amo04g0489 997 CDD HMA 131 192 IPR006121 GO:0046872
Amo04g0489 997 SUPERFAMILY HAD-like 650 977 IPR036412 -
Amo04g0489 997 Gene3D - 419 541 - -
Amo04g0489 997 PRINTS P-type cation-transporting ATPase superfamily signature 487 501 - -
Amo04g0489 997 PRINTS P-type cation-transporting ATPase superfamily signature 796 807 - -
Amo04g0489 997 PRINTS P-type cation-transporting ATPase superfamily signature 818 828 - -
Amo04g0489 997 PRINTS P-type cation-transporting ATPase superfamily signature 871 890 - -
Amo04g0489 997 PRINTS P-type cation-transporting ATPase superfamily signature 651 665 - -
Amo04g0489 997 PRINTS P-type cation-transporting ATPase superfamily signature 894 906 - -
Amo04g0489 997 ProSitePatterns E1-E2 ATPases phosphorylation site. 653 659 IPR018303 -
Amo04g0489 997 Gene3D - 130 195 - -
Amo04g0489 997 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 752 950 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo04g0489 997 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 404 677 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo04g0489 997 Gene3D - 45 116 - -
Amo04g0489 997 SUPERFAMILY HMA, heavy metal-associated domain 126 199 IPR036163 GO:0046872
Amo04g0489 997 PANTHER ATP7, ISOFORM B 7 990 - -
Amo04g0489 997 SUPERFAMILY Calcium ATPase, transduction domain A 452 537 IPR008250 -
Amo04g0489 997 SFLD Haloacid Dehalogenase 633 923 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0489 Amo-Chr4 9947764 9954315 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0489 1 997 Primary Pumps ATPases AT5G44790 73.810 0.0 1499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0489 K17686 - gmx:100804960 1598.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1617 14 29389618 29396269 Amo04g0489 04 9947764 9954315 hybridization