Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0480 ATGGCTAAACTTGAGTCTAATCACACTCCCCCACCCACAATGAGCCCTACCATAAGCAAACCATGTTACCCTCCACAATCTCCCAACAACAATTCAGGTTGCTTCAACTTAATGGTTATTTTGGCGGCAATTGTATGCGCCTTCCTTTGCGCGCTAGGCCTCAACACCATTCTACAATGCACGCTACAATGCGCGAATCACGTCCTCACGGAGCCTTTACAATGGATTGCTTCCAGAGGGATCAACTCAGGGCTCAAGAAGAAAGAAATGATAAGGTTTCTTCCAAAGTGTAATCATCGTTTTCATGTGGCTTGCATTGATAAGTGGCTTCTTTCCCATTCCTCTTGCCTAACATGGAACTTCCTCAAGTCTAATGATACATCACACCCTTTTCATATTCTCATAGCTTAA 411 0.4404 MAKLESNHTPPPTMSPTISKPCYPPQSPNNNSGCFNLMVILAAIVCAFLCALGLNTILQCTLQCANHVLTEPLQWIASRGINSGLKKKEMIRFLPKCNHRFHVACIDKWLLSHSSCLTWNFLKSNDTSHPFHILIA* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0480 136 SUPERFAMILY RING/U-box 86 116 - -
Amo04g0480 136 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 24 91 - -
Amo04g0480 136 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 89 117 - -
Amo04g0480 136 PANTHER OS06G0666500 PROTEIN 24 91 - -
Amo04g0480 136 PANTHER OS06G0666500 PROTEIN 89 117 - -
Amo04g0480 136 Pfam Ring finger domain 86 116 IPR001841 -
Amo04g0480 136 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 120 IPR013083 -
Amo04g0480 136 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0480 Amo-Chr4 9787062 9787613 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0480 11 118 C3H Transcription Factor Family AT3G10910 32.432 8.31e-16 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0480 - K19040 ahf:112794746 271.166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1608 14 29254719 29255267 Amo04g0480 04 9787062 9787613 hybridization