Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0439 ATGGAGTTGGAAGCTGAACTGGTAACTGCTAACGAAAGTTCTGCTGAAAAAACAGTAGGACCATGTGTGGGAGCTTCAATTTTGGAACCATATATTGGTATGGAATTTGATTCTGAAGCTGATGCCAAGAACTTTTATGATGAATATGCAAGACAGGAAGGGTTTATTGTGCGCATTGATAAATGTCATCGTTCTGAAATTGACAACAGAATTATTTCTCGTCGTCTTACTTGCAATAAGGAAGGTTTTCATGTGAGAGGGAAAAATGATAAAGTCAACCCTTATCGGAAACCACGGGTTAGCATAAGAGAAGGCTGCGAGGCAATGATGATGGTCAAAGTTAATAAATGTGGGAAGTGGGTTGTTACTAAATTTGTAAAAGAACATAGTCATCCACTGATGGGTTCTGGTGTTCGTTCTTATCGTACAACAGAATCGAAGGATAAGAGAATTCGACAACTCACAAAGGAACTCGAGCGTCGAGATCAGCAATGTCAGCAATATCGCAAGCTGATACTTTCCCTTCTGGAAACTGTTGAGGAGCAAAATAAATTCTTATCAACGAAAGTTGAACAKGTTGTTMAGTGTGTGAAACAACTTGAGAATGATGTGCAAAAACCTTTGGACACTAGCTAG 636 0.3915 MELEAELVTANESSAEKTVGPCVGASILEPYIGMEFDSEADAKNFYDEYARQEGFIVRIDKCHRSEIDNRIISRRLTCNKEGFHVRGKNDKVNPYRKPRVSIREGCEAMMMVKVNKCGKWVVTKFVKEHSHPLMGSGVRSYRTTESKDKRIRQLTKELERRDQQCQQYRKLILSLLETVEEQNKFLSTKVEXVVXCVKQLENDVQKPLDTS* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0439 211 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 8 208 - -
Amo04g0439 211 Pfam FAR1 DNA-binding domain 44 134 IPR004330 -
Amo04g0439 211 Coils Coil 151 171 - -
Amo04g0439 211 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 8 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0439 Amo-Chr4 8767436 8770634 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo04g0439 FAR1 1.5e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0439 - - pvu:PHAVU_010G032600g 258.84