Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0426 ATGGCATCATCACAAGTTGAAATTGCTTCGTCTTCGCCCTTTGGTTTGGTTCTGAGGGACCGTAACCACCGTGGCGATGGATGCAGAGAAAGCAATGTTGTTAATAAGGCCACACATGCTGCTCTTCAAAGGAACATCAAGAACTTCGTCATGGACCACCTTAACATGTCCATGTCCATGTCCAACTCTGATTCAACAAGAAATCTCAACGAGAACAATTCCGCCCATTGGAACGAAATTCATCATAATCAAGATCATGACCATGACAACCAACATCGCCGCCACCACCGGCGCCACCGCAACGTGTCGAATCTTCATGTCTCAAGTGCCATGGAGTTCAAGGATGGATCCTCATTGAACTCTTTGATTAGCCCGAGACAAACCCGGCTTCTTGATCGCTGGGCCGCGAAACAAGCCCGGGAAATTGTTTCAAATTTAGAGAGTGAGGCTGGGTTGTTGTCAATCGATAATAACAAGAAAGAACTTGGAAGCACAGGTAGTTGCAACTCTGATGGTGATGATAATAAGTGTGTAGATATCTCGAACCTTGCTGCTTCTTCACTTGTTCAGATATGGGAGAAGAGGCTCAGTGGATCCAAGCCTGAAACGACGGCGTCTAATGGCGCCAAAACTAGTCCCACTGCTGTTACTTCCACCCATAATTGTGATTCCGAGGCAGGGGAATCTTCTTCCTGCGCCGTGGCTAACGAGGACTGGGAAACACACAGTGATCAGTCCTTTTCGCCACAGTCGCGGTGGTCGTCTTGCGAGACTGCAACAACAGAGGCAGAAAGGCCGGTTTCTGTTGCAGACATAATCAAGAGGCTAACTACACCAAGTGTCCATGGCGATGACAATGAATCTGAGGGGTTTATTAGCAGCGTGGCAAGCTCTCCTTGCAGAGATTTGGCACCGGAGAATTCTGAGAGGAGGGCTTTTCCCCTCATGATTGGTGCCCCGGGAAGGATTCGAGGCCGCCGGATTTTCACCGATATGCTTATGCAGCTGGAGAGGGACCGCCGAGGGGAGCTTAACCACCTGGCAGAACGCCGAGCCGTGTCGAGGTTCCCTCAAAAAGGACGAATTCAGTCATTGCTTCGATTAAGATTGTTGCAGCGGAATGCAGCGGCTGAGAATGATAAATCTCAACAGAAATCAACATTATCTAGACAGAATAAACAGACACAAGAATCTGCTGTTGTTATGGAACGAAGGGGGAAATTTAGCACCGCAGTTGAACACAGAAATGCGGAACAGGCAGAAGTAGCTCATCCAACAACGTCACTGGTACAGACAGTTACAAATCCTGTAGCGTCGGATAAGTCTGCTGGCAAAGACACTTGCAACCAGACTGTTGTTCATGAGACTGCTAATAGCTCTGGAGAATCCACACGAGTATCAATCCCTGAGACTAATGCAGACCACAATAAAGAGAAAGCACATGCAAGTTCACATGTGACACTGCAAGAAACATGTGCAGAGGTTCAAAATAATGATTCGCTTGATACTGCCAAGGAACCAGCATCGATGGCTGATGATTCGGGCCATAATGAGATTGCAAACGGGGCTGAGTCAAGCGAACAACAGCATGCTGTAGAAGGGAGAGATGCAACAGATCAACACATTGATGAAAGCAATTATGATGATATGTTAGAAGAGATAGAGGCCATGGATCAGAACTATGATGCAACTAGTTATGACTGGATCAGCGAAATTTCTCGACCGAGGAGCTACTGGGAAGAGCGTAGGCAAGCATGGTACAAAGAGATGCTTGCCACTTCTCAAAATGAGGATATACGTATTCTCCTTGAAAGAAAAACAGTCTCGACTTTCCTTTCCAGCAGCTTCCGGGCAGTGATAGATAGATTGATGAACTCCCATAAGGGAACACAGACACAACTAGTCAATTGCCAAGATGATGAGGACGAAAACCAAATTCTGATGGCGTATCTACAAGAACGCATGCGTTCTGCAAAATCTCCTCAAGAAGACAAACAAGAGGGAGGAGGGGAGGAGGAAAAGCGAGACGAGATGCAAAATGCTGGACAAGAAGAGGAGCAGAGGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCGGTGTCATGAAGATGTTGAGTATTTTCCACAATCCTCATCACCATGCCCTTCAAGAACATGGAGTTATAAAGACAATGAAACCTGTGATGATTCTGATGGAGTAGTATTCGCATGTGCATCTGCATCTACATATTCTCCTTCACATTCACAACCCTCTCAGTTTCAATCTGCCTATCATGATAATAGGCGAAGTTCTTCACCGCCTAATCATCATTCAATGGAAATGGAACTCATCTATGATTTGAGAAGACAAATGGAGCAACTTCATCATGAGATGTCTGAGCTAAGGAAATCGATTAAGAGCTGCGTGGATATGCAGATTCAGATGCAATTACAACAGCAATCCATGGTTCAAACAGTTAACAAAGAAGAAAACATGACGCAGAAGAAGGTACCAAAAAAAGGCAATTGCTGTATATGCCATGATAATAAAGCTGACTCAATTTTATACAGGTGTGGGCACATGTGTGCGTGTCTAAAGTGTGCCAATGAGCTGCAATGGAATGGTGGAAAGTGTCCAATTTGTCGAGCCAAAATATTAGATGTTGTTCGAGTATACATTGATGCTTAG 2667 0.4578 MASSQVEIASSSPFGLVLRDRNHRGDGCRESNVVNKATHAALQRNIKNFVMDHLNMSMSMSNSDSTRNLNENNSAHWNEIHHNQDHDHDNQHRRHHRRHRNVSNLHVSSAMEFKDGSSLNSLISPRQTRLLDRWAAKQAREIVSNLESEAGLLSIDNNKKELGSTGSCNSDGDDNKCVDISNLAASSLVQIWEKRLSGSKPETTASNGAKTSPTAVTSTHNCDSEAGESSSCAVANEDWETHSDQSFSPQSRWSSCETATTEAERPVSVADIIKRLTTPSVHGDDNESEGFISSVASSPCRDLAPENSERRAFPLMIGAPGRIRGRRIFTDMLMQLERDRRGELNHLAERRAVSRFPQKGRIQSLLRLRLLQRNAAAENDKSQQKSTLSRQNKQTQESAVVMERRGKFSTAVEHRNAEQAEVAHPTTSLVQTVTNPVASDKSAGKDTCNQTVVHETANSSGESTRVSIPETNADHNKEKAHASSHVTLQETCAEVQNNDSLDTAKEPASMADDSGHNEIANGAESSEQQHAVEGRDATDQHIDESNYDDMLEEIEAMDQNYDATSYDWISEISRPRSYWEERRQAWYKEMLATSQNEDIRILLERKTVSTFLSSSFRAVIDRLMNSHKGTQTQLVNCQDDEDENQILMAYLQERMRSAKSPQEDKQEGGGEEEKRDEMQNAGQEEEQRQEQEQEQEQERCHEDVEYFPQSSSPCPSRTWSYKDNETCDDSDGVVFACASASTYSPSHSQPSQFQSAYHDNRRSSSPPNHHSMEMELIYDLRRQMEQLHHEMSELRKSIKSCVDMQIQMQLQQQSMVQTVNKEENMTQKKVPKKGNCCICHDNKADSILYRCGHMCACLKCANELQWNGGKCPICRAKILDVVRVYIDA* 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0426 888 MobiDBLite consensus disorder prediction 741 770 - -
Amo04g0426 888 Coils Coil 777 797 - -
Amo04g0426 888 MobiDBLite consensus disorder prediction 504 541 - -
Amo04g0426 888 PANTHER BNAC05G24000D PROTEIN 1 887 - -
Amo04g0426 888 MobiDBLite consensus disorder prediction 376 399 - -
Amo04g0426 888 CDD mRING-HC-C3HC5_NEU1 835 875 - -
Amo04g0426 888 Coils Coil 374 394 - -
Amo04g0426 888 Coils Coil 674 698 - -
Amo04g0426 888 MobiDBLite consensus disorder prediction 82 102 - -
Amo04g0426 888 SUPERFAMILY RING/U-box 835 880 - -
Amo04g0426 888 Pfam Zinc finger, C3HC4 type (RING finger) 833 880 - -
Amo04g0426 888 MobiDBLite consensus disorder prediction 376 402 - -
Amo04g0426 888 MobiDBLite consensus disorder prediction 198 260 - -
Amo04g0426 888 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 818 887 IPR013083 -
Amo04g0426 888 ProSiteProfiles Zinc finger RING-type profile. 836 875 IPR001841 -
Amo04g0426 888 MobiDBLite consensus disorder prediction 657 705 - -
Amo04g0426 888 PANTHER BNAC05G24000D PROTEIN 1 887 - -
Amo04g0426 888 MobiDBLite consensus disorder prediction 741 762 - -
Amo04g0426 888 MobiDBLite consensus disorder prediction 654 719 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0426 Amo-Chr4 8311251 8316029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0426 836 884 C3H Transcription Factor Family AT3G06140 38.776 2.21e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0426 - - ahf:112741787 1601.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1559 14 28053198 28058074 Amo04g0426 04 8311251 8316029 hybridization