Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0403 ATGGAAGCTTACGGTGGGATTTTGGTTGATGAGAAAGCCGTTAGGGTCGAGAACGCTTTCCTCGAATTCCTCAAGAGCTTCAGGTCCGGGAACCGGAACGAGCTCCACTATGAGGCGGAGATAGAAGTAATGAGGGCCAACGAATCCAACACAATGTTCATCGATTTCGAACACGTCATCACTTTCAGTGACCTTCTCCAGAAAGCTATCTCTGATGAATATTTGAGATTTGAGCCTTATCTGAAGAATGCTTGCAAGAGATTCGTTATGGAACTGAAGCCGACCTTCATATCTGATGATAACCCCAACAAAGACATCAATATTGCCTTCTACAACCTTCCAATCGTTAAGCGATTGAGGGAACTGGCTACATCAGAAATTGGAAGACTAGTATCCGTGACTGGGGTAGTAACCAGGACAAGTGAGGTTCGTCCTGAGCTTATCCAGGGAACATTCAAGTGCTTAGAGTGTGGTGGGGTTATAAAAAATGTGGAACAAGAATTCAAGTATACCGAGCCCACAATCTGCCCGATTCCAACCTGTAACAAACGAGCAAGATGGCTACTGATGCGCCAAGAGAGCAAATTTGCTGACTGGCAACGGGTCAGGATGCAAGAGACTTCCAAAGAGATACCTGCTGGGTCGCTGCCTAGGTCCTTGGATGTTATTCTTCGTCACGAGATTGTGGAACAGGCCAGGGCTGGTGACACGGTGATTTTCACAGGAACTGTAATTGTTATTCCTGACCTTTTGGCATTGGCATCCCCTGGAGAGAGATCAGAATGCCGCCGGGAAGGTTCTCAACGCAAGGGTCCTGCAGCTGGAAATGAAGGTGTTAGGGGCCTTAGGGCCCTTGGAGTCAGAGACCTCTCTTATCGCCTGGCCTTTATTGCCAACTCCGTTCAGATTTGCGATGGTAGAAGAGATGTAGACATCCGAAATAGAAAGAAGGACTCTGATGATGATGATATGCAGTTTACTACACAGGAGCTGGATGAAATACAACGAATGAGGAATATTCCAGATTTCTTCAAGAAACTTGTTAACAGCGTTGCTCCAACTGTTTTTGGTCATCAAGACATAAAGAGAGCAATCCTTCTTATGCTTATGGGCGGTGTCCACAAATTAACTCATGAAGGCATCAACCTCAGAGGAGATATAAACGTTTGCATTGTTGGGGATCCCAGCTGTGCAAAGAGTCAATTTCTCAAGTATACTTCAGGCATAGTTCCAAGATCTGTTTATACATCTGGGAAATCATCATCTGCTGCTGGATTGACTGCAACAGTTGCTAAGGAACCAGAAACTGGGGAGTTTTGTATTGAGGCTGGTGCATTGATGCTTGCAGACAATGGCATTTGCTGCATTGATGAATTTGACAAGATGGAGATCAGGGATCAGGTTGCAATTCATGAGGCCATGGAACAGCAAACAATTAGTATCACAAAAGCAGGAATTCAAGCAACACTTAATGCCCGCACTTCTATTCTTGCCGCTGCCAACCCTGCTGGGGGACGCTATGACAAGTCTAAACCACTTAAGTACAATGTGGCTCTTCCACCTGCTATACTCTCGAGGTTTGATCTTGTATATGTTATGATTGATGATCCAGACGATCAGACAGATTACCACATAGCTCATCATATTGTGAGAGTTCATCAAAAGCGTGAAGAGGCTCTTACTCCGACTTTCACCACAGCGCAACTGAAGCGTTATATAGCTTATGCAAAAACTCTCAAACCAAAGCTTACGGCAGAGGCCAAAAAAATACTAGTAGACTCTTATGTGGCTCTCCGCAGAGGTGATACAAATCCTGGGAGTAGGGTTGCATATCGTATGACAGTTAGGCAGTTGGAGGCATTAATCAGGCTGTCTGAAGCCATTGCACGATGTCATTTGGAAAATCAGGTGCAACCTCAACATGTTAACTTAGCAGTGAAGCTGCTGAAAACATCCATAATAAGTGTGGAGTCTGGTGACATCGATCTATCTGAGTTTCAAGAAGAGAACCAGGGTGATGATGGTGATAGAAATGATAATGATAGAGATGACGGGGCTGATATTAAAAGAGAAGCTGGTAGTCAAGAGGGAACCCAGCAAGCTGCTGGAACAAATGAAAATGCAGCAGATGGATCTAACCCCCAGCCGAAGAAACTAATCATAAGTGATGAATACTTTCAGAGAGTGACCAGGGCACTCATCATGCATCTTAGACAGCACGAAGAAACTGTTCTGCAACAAGGAACTGGGTTGGCTGGAATAAGGCAACGAGATTTGATTCAATGGTATGTAGACCAACAAAATGAGAAAAACGCTTACAGTTCTATGGAGGAGGTTAAAGCAGAACTTTCCAGACTCAAAGCTATTATAGAGAGTTTAATCCGAAGAGAGGGCTATTTGATAGTGCTGGATGATGGGATGCAAGAAGCAGCAGAAGGTGCGGCTCCAGAGCACGTATCTAGAAATGATCGAATTTTAGCCGTGGCTCCTAATTATTACATTGATTGA 2508 0.445 MEAYGGILVDEKAVRVENAFLEFLKSFRSGNRNELHYEAEIEVMRANESNTMFIDFEHVITFSDLLQKAISDEYLRFEPYLKNACKRFVMELKPTFISDDNPNKDINIAFYNLPIVKRLRELATSEIGRLVSVTGVVTRTSEVRPELIQGTFKCLECGGVIKNVEQEFKYTEPTICPIPTCNKRARWLLMRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEQARAGDTVIFTGTVIVIPDLLALASPGERSECRREGSQRKGPAAGNEGVRGLRALGVRDLSYRLAFIANSVQICDGRRDVDIRNRKKDSDDDDMQFTTQELDEIQRMRNIPDFFKKLVNSVAPTVFGHQDIKRAILLMLMGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMEIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKREEALTPTFTTAQLKRYIAYAKTLKPKLTAEAKKILVDSYVALRRGDTNPGSRVAYRMTVRQLEALIRLSEAIARCHLENQVQPQHVNLAVKLLKTSIISVESGDIDLSEFQEENQGDDGDRNDNDRDDGADIKREAGSQEGTQQAAGTNENAADGSNPQPKKLIISDEYFQRVTRALIMHLRQHEETVLQQGTGLAGIRQRDLIQWYVDQQNEKNAYSSMEEVKAELSRLKAIIESLIRREGYLIVLDDGMQEAAEGAAPEHVSRNDRILAVAPNYYID* 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0403 835 Pfam MCM P-loop domain 331 553 IPR001208 GO:0003677|GO:0005524|GO:0032508
Amo04g0403 835 Pfam MCM OB domain 119 247 IPR033762 -
Amo04g0403 835 PANTHER DNA REPLICATION LICENSING FACTOR MCM6 10 787 - -
Amo04g0403 835 ProSiteProfiles MCM family domain profile. 343 549 IPR001208 GO:0003677|GO:0005524|GO:0032508
Amo04g0403 835 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 653 IPR027417 -
Amo04g0403 835 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 74 86 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Amo04g0403 835 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 116 128 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Amo04g0403 835 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 166 183 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Amo04g0403 835 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 219 230 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Amo04g0403 835 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 278 299 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Amo04g0403 835 Gene3D - 146 197 - -
Amo04g0403 835 MobiDBLite consensus disorder prediction 693 712 - -
Amo04g0403 835 Coils Coil 776 796 - -
Amo04g0403 835 Pfam MCM6 C-terminal winged-helix domain 717 833 IPR041024 -
Amo04g0403 835 Gene3D - 8 115 - -
Amo04g0403 835 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 10 787 IPR031327 GO:0003677|GO:0005524|GO:0032508
Amo04g0403 835 CDD MCM6 346 652 - -
Amo04g0403 835 SUPERFAMILY Nucleic acid-binding proteins 20 249 IPR012340 -
Amo04g0403 835 MobiDBLite consensus disorder prediction 664 717 - -
Amo04g0403 835 Gene3D - 119 247 IPR012340 -
Amo04g0403 835 SMART mcm 115 654 IPR031327 GO:0003677|GO:0005524|GO:0032508
Amo04g0403 835 Pfam MCM AAA-lid domain 568 653 IPR041562 -
Amo04g0403 835 ProSitePatterns MCM family signature. 452 460 IPR018525 GO:0003677|GO:0005524|GO:0006260
Amo04g0403 835 Pfam MCM N-terminal domain 18 112 IPR027925 -
Amo04g0403 835 PRINTS Mini-chromosome maintenance (MCM) protein family signature 384 399 IPR001208 GO:0003677|GO:0005524|GO:0032508
Amo04g0403 835 PRINTS Mini-chromosome maintenance (MCM) protein family signature 444 458 IPR001208 GO:0003677|GO:0005524|GO:0032508
Amo04g0403 835 PRINTS Mini-chromosome maintenance (MCM) protein family signature 472 485 IPR001208 GO:0003677|GO:0005524|GO:0032508
Amo04g0403 835 PRINTS Mini-chromosome maintenance (MCM) protein family signature 496 508 IPR001208 GO:0003677|GO:0005524|GO:0032508
Amo04g0403 835 PRINTS Mini-chromosome maintenance (MCM) protein family signature 523 531 IPR001208 GO:0003677|GO:0005524|GO:0032508
Amo04g0403 835 Gene3D - 321 658 IPR027417 -
Amo04g0403 835 MobiDBLite consensus disorder prediction 670 691 - -
Amo04g0403 835 Gene3D - 715 835 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0403 Amo-Chr4 7864127 7869918 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0403 1 835 Core DNA Replication Machinery Family AT5G44635 72.832 0.0 1287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0403 K02542 - gmx:100787290 1370.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1533 14 27474641 27480600 Amo04g0403 04 7864127 7869918 hybridization