Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0398 ATGTCTCGACTTCTCATTCTACCCAAACACTTTGCTTCCATCAACAATCCATGGCCATGGCTTTCTTTGAGTCTCTTCTCAACTCGTTCTTCTTCTTCAAGATCCAAAGGCAAGTCTTTCACTGTCTCATACCTCGTTGGAACTTGCGGGTTCTCACCAGAACGTGCAGTTTCCGTTTCCAAACGCTTTAGCTTCAAAACAAGCGAAAGACCAGACACAGTGATTGCGTTCTTCAGGAACATTGGGTTATCCCAAACGTCACTGTTCAGAGTCCTCCAATCCATGCCACAGTTACTCGTAGCCAGTCCCGAGAGATCTTTGCAGCCAAAAATCGATTTTTTTAAGTCCAAAGGGTTTTCTACCTCTGATATATGCAAGACCATTGTTAATAACCCTTTGATCCTCATCCGAAGCGTGCAGGTTCAGATAGCTCCCGCGTTTGATTTCTTCGATGACATGTTTCCCTCTAGGGATAAGCTCATCAAAGCTATTATCCGTAATTCGAGTATTCTCTATGACTTTAAAATATATGTAGAACCTAATATAAAGCTGCTTAGAGAAGCAGGAGTTCCTATTTCACATGTTATTAGGTTAATAGAATACTGCCCTCGCCAATTGAAGGCAAACCCTAAGAGGTTTAAGGAGGTATTGCAGGAAATTAAGGAGATGAAGTTTGATCCCTTCAAGTTTCAATTTGTTGTGGCTATTTATGTGAATGTAACCGTAGGAAAATCCTCATTGGCAAGAAGGAAAGGTATTTATAGAAAGTGGGGTTGGACCGATGGCAATATTTTTGCAGCATTTAGAAACCATCCGTGGTGTCTTGTCATCTCGGATGACAAGATTGAAGCAATCATGGATTATCTGGTGAATGAATTGGGTTATTCCGCTTCTTCTATATCTAGTAATCCCTGGGTGTTGTCCATGAGTTTGAAAAGGCGGATTATTCCCAGGGGTTCTGTTATTCTAGTTTTGCAGTCTAAGGGTCTGGGGAGGAAGCTGGGCTTGGGTACAATATTTAGGTGCAATGAAGAGATCTTCTTGAATAAGTTTATCTTCCGCCATGAGAAAGAAGCTGACGATCTATTGAAGTTCAATCCATGGCTATGGCTTGCTTCGAGACTCATCTCAACCTCGTCTCCTTCTTCAGCCTCCAAAGACAACTCTTTTGCACTCTCTTACCTAACTCATACTTGTGGGTTCTCACCAGAACGCGCTATCACCATTTCCAAGCGCCTCAAGTTAGAAACAAGTGAAAAACCAGATACAGTGATTGAGTTCTTCAAGAACCAAGGTTTGTCCCAAACTATGATCTTGAAAGTCCTTCGAACTGTTCCAGACTTACTTTTAGTCAAACCCGAGAACACTTTGCAGCCAAAGTTTGATTTTTTCAAGTCAAAAGGGTTTTCTGTCTCTGACATTCACAGCATGATATTAACATCCCCTGAAATTCTCAAAAGAAGCTTGAATAATGAGATCATTCCCTGCTTCAATTTCCTTGACAACATGTTTGAATGTAAGCACAACCTCATGAAAACTGTTGTAAGCTATTCAGGTGTTCTACATATCTTTGCCAAACGTATTGAACCTAATATCAAGCTGCTGAGAGAAGAGGGTGTTCCTGAATCACACATTCTTAGGTTGTTAGAGTACTATGGCAAGACAATTAAGGTATGTCCTACGCGATTTAAGAAGGCAGTGGAGGAAGTGAAGGAGATGAAGACTGATCCACTCAAGTTGCAATTTGTTATATATGTTCATATAAAGTTACATCTGAGCAAATCCACATGGGAAAGAAAGAAAGGTATATATAGAAAATGGGGTTGGACCGAGGATGATATTTCTAAAGCATTTAGAACCCACCCGTTCTGTATGTGCACTTCAGACAGTAAGATTGAGGCGGTCATGGATTTTCTGGTGAACACATTGGGCTGCAAATCTTCTGACATTATCAGATGTCCATCACTGTTGACCATGAGCTTGAGAAAGCGAATTATTCCAAGGGGATCTGTTGTTAAAGCTTTGCTGTCGAAGGGTCTGATTAAGAAGCTGAGCTGGACTGTATTTCGGTATAATGAATTGGAGTTCCTGGATAAGTTTGTCCATTGTTATGACAAGGAAGCCAATGAGCTATTGAAGTTGTATCGGGTAATTGTGTTTGCTGTGCCATTTAAACAGTTCATGCATTCACATCTTAACATCACTATGGCTAGAATGGGACAAAAGAAGTCTAAAGTGCTTCTTATCAGCCGGAACGTTAATCCTTCTGGGGTTCTCATGGATGAAATGTAG 2292 0.4088 MSRLLILPKHFASINNPWPWLSLSLFSTRSSSSRSKGKSFTVSYLVGTCGFSPERAVSVSKRFSFKTSERPDTVIAFFRNIGLSQTSLFRVLQSMPQLLVASPERSLQPKIDFFKSKGFSTSDICKTIVNNPLILIRSVQVQIAPAFDFFDDMFPSRDKLIKAIIRNSSILYDFKIYVEPNIKLLREAGVPISHVIRLIEYCPRQLKANPKRFKEVLQEIKEMKFDPFKFQFVVAIYVNVTVGKSSLARRKGIYRKWGWTDGNIFAAFRNHPWCLVISDDKIEAIMDYLVNELGYSASSISSNPWVLSMSLKRRIIPRGSVILVLQSKGLGRKLGLGTIFRCNEEIFLNKFIFRHEKEADDLLKFNPWLWLASRLISTSSPSSASKDNSFALSYLTHTCGFSPERAITISKRLKLETSEKPDTVIEFFKNQGLSQTMILKVLRTVPDLLLVKPENTLQPKFDFFKSKGFSVSDIHSMILTSPEILKRSLNNEIIPCFNFLDNMFECKHNLMKTVVSYSGVLHIFAKRIEPNIKLLREEGVPESHILRLLEYYGKTIKVCPTRFKKAVEEVKEMKTDPLKLQFVIYVHIKLHLSKSTWERKKGIYRKWGWTEDDISKAFRTHPFCMCTSDSKIEAVMDFLVNTLGCKSSDIIRCPSLLTMSLRKRIIPRGSVVKALLSKGLIKKLSWTVFRYNELEFLDKFVHCYDKEANELLKLYRVIVFAVPFKQFMHSHLNITMARMGQKKSKVLLISRNVNPSGVLMDEM* 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0398 763 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 31 365 - -
Amo04g0398 763 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 381 717 - -
Amo04g0398 763 Pfam mTERF 76 226 IPR003690 GO:0003690|GO:0006355
Amo04g0398 763 Pfam mTERF 590 692 IPR003690 GO:0003690|GO:0006355
Amo04g0398 763 Pfam mTERF 142 347 IPR003690 GO:0003690|GO:0006355
Amo04g0398 763 Pfam mTERF 425 554 IPR003690 GO:0003690|GO:0006355
Amo04g0398 763 Pfam mTERF 72 150 IPR003690 GO:0003690|GO:0006355
Amo04g0398 763 Gene3D Transcription termination factor 3, mitochondrial 48 171 IPR038538 -
Amo04g0398 763 Gene3D Transcription termination factor 3, mitochondrial 506 714 IPR038538 -
Amo04g0398 763 Gene3D Transcription termination factor 3, mitochondrial 172 365 IPR038538 -
Amo04g0398 763 PANTHER CGI-12 PROTEIN-RELATED 31 365 IPR003690 GO:0003690|GO:0006355
Amo04g0398 763 PANTHER CGI-12 PROTEIN-RELATED 381 717 IPR003690 GO:0003690|GO:0006355
Amo04g0398 763 SMART mt_12 89 120 IPR003690 GO:0003690|GO:0006355
Amo04g0398 763 SMART mt_12 161 191 IPR003690 GO:0003690|GO:0006355
Amo04g0398 763 SMART mt_12 475 507 IPR003690 GO:0003690|GO:0006355
Amo04g0398 763 SMART mt_12 265 296 IPR003690 GO:0003690|GO:0006355
Amo04g0398 763 SMART mt_12 125 155 IPR003690 GO:0003690|GO:0006355
Amo04g0398 763 SMART mt_12 196 226 IPR003690 GO:0003690|GO:0006355
Amo04g0398 763 SMART mt_12 615 646 IPR003690 GO:0003690|GO:0006355
Amo04g0398 763 SMART mt_12 439 470 IPR003690 GO:0003690|GO:0006355
Amo04g0398 763 SMART mt_12 297 331 IPR003690 GO:0003690|GO:0006355
Amo04g0398 763 SMART mt_12 511 541 IPR003690 GO:0003690|GO:0006355
Amo04g0398 763 SMART mt_12 647 681 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0398 Amo-Chr4 7783636 7793224 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Amo04g0398 mTERF 1.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0398 K15032 - twl:120002213 310.457