Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0390 ATGTTTAACTCCCACCGTTACAAACCCCTTATCTATCTAAACCTAAAAGTTCTATTCCGAAGAACACAACCACACATGTTCTGCACTTCACAATCACACTCTTTGACGGTTTCATACCTCATCAATAACCTTGGCTTCACCCCACAATCTGCTCTAAACGCATCAAAACGGCATCGTTTCAAGACCCCACACAAGGCAGACTTAATAATCGCATTCTTCAAGACCCATGGATTCTCCCATTCCCAAATCGCTGCCATTGTTGCCAAGCTACCTAAGATACTTTCAGCCAATCCGGAAAGAATCCTGCCAAAGTTTCAATTTCTGGCCTCCAAAGGTGCTTCCACCGATGACATTGTTCTGCTAGCCACTAGGAACCCTAGATTCTTGCATTCGAGCCTCAAGAACAACATAATCCCTACTTATGGAATGATGAACACCTTCTTTGAATCCGATCAGAAAACGCTCCGTTGCATTGCTTCTTTCCCTGCTTTGTTCATGGAGCCTCGCTTGGTGAAAAATGTCAAGTTGTTGGCTGATGCAGGAGTCTCTAACTCCGCAATCCGCCATTTGTGTCGTACCAGGGTGTCCGTGCTCTATTCTTCTGATTTGAGGAAGCTTGTGGATGAAGTAAAGGAATTAGGGTTTGATCCGTCATCGGTTAAATTCGCCATAGCTTTGCTAGCCAAGAAGACTATACGGAAATCACTGTGGGATGCGAAAGTCGATATCTTGAAGAGCTGGGGTTGGTCTAAAGAAACAACGTCCCAAGCATTCTGGAGGAACCCTTTATGTATGCTATCATCTAAGGATAAGATTAATGAGGTGATGAAACTTTGGGTCAATCAATTAGGTTGGGACCCTTTGGCTCTTGCCAAGATTCCATGGCTTTTTGGATATAATTTGGAGAGAAGGATTATTCCGAGGGCTTTTGTTCTTCAGTATTTACTTTCAAGAGGTCTGAGAAACAAGAATGATAATTTAAGTACCCCATTTTATGTTTCTGAAGAGTTGTTCTTTAACAAGTTTGTGGAATGTTTTACCGAGGAAAGGTCTCAACTACGTAAGATATACTATGAGAAAAAAGGATGTTCATGA 1095 0.4219 MFNSHRYKPLIYLNLKVLFRRTQPHMFCTSQSHSLTVSYLINNLGFTPQSALNASKRHRFKTPHKADLIIAFFKTHGFSHSQIAAIVAKLPKILSANPERILPKFQFLASKGASTDDIVLLATRNPRFLHSSLKNNIIPTYGMMNTFFESDQKTLRCIASFPALFMEPRLVKNVKLLADAGVSNSAIRHLCRTRVSVLYSSDLRKLVDEVKELGFDPSSVKFAIALLAKKTIRKSLWDAKVDILKSWGWSKETTSQAFWRNPLCMLSSKDKINEVMKLWVNQLGWDPLALAKIPWLFGYNLERRIIPRAFVLQYLLSRGLRNKNDNLSTPFYVSEELFFNKFVECFTEERSQLRKIYYEKKGCS* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0390 364 Pfam mTERF 71 220 IPR003690 GO:0003690|GO:0006355
Amo04g0390 364 Pfam mTERF 239 336 IPR003690 GO:0003690|GO:0006355
Amo04g0390 364 PANTHER CGI-12 PROTEIN-RELATED 26 360 IPR003690 GO:0003690|GO:0006355
Amo04g0390 364 Gene3D Transcription termination factor 3, mitochondrial 150 355 IPR038538 -
Amo04g0390 364 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 26 360 - -
Amo04g0390 364 SMART mt_12 119 151 IPR003690 GO:0003690|GO:0006355
Amo04g0390 364 SMART mt_12 255 286 IPR003690 GO:0003690|GO:0006355
Amo04g0390 364 SMART mt_12 84 114 IPR003690 GO:0003690|GO:0006355
Amo04g0390 364 SMART mt_12 287 321 IPR003690 GO:0003690|GO:0006355
Amo04g0390 364 SMART mt_12 155 183 IPR003690 GO:0003690|GO:0006355
Amo04g0390 364 SMART mt_12 188 216 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0390 Amo-Chr4 7669553 7674462 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Amo04g0390 mTERF 1.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0390 K15032 - gmx:102666739 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3492 01 107540679 107546070 Amo04g0390 04 7669553 7674462 PCT
Amo11g2656 11 134715027 134721649 Amo04g0390 04 7669553 7674462 PCT
Amo04g0390 04 7669553 7674462 Amo01g3492 01 107540679 107546070 PCT
Amo04g0390 04 7669553 7674462 Amo11g2656 11 134715027 134721649 PCT