Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0388 ATGCATGCAGCATCTATTCAAGTAAAAGAACTGCAATTTAGTTTCTCATTAATAAAAAAAATATATGTTGTTTTAGTAAAAGTGTTTCTTACTTATTCCGCCAAAATCTTCACCTTGTTTTTTCCTTTTCCCAAAATACCCTCTTCCTCTCGCCCTCTTCTCCCCTCGGTTCTCGCCCCAGCCGGTGGAACCCTCTCTGCTTTCACGCCATCGGCAAAGTCTCGCTTTCTACTCTCTAAACTGCCTGCCTTCCCTTCTCTTCTTGCTCAATTTCTTCCTTTTTTTTATTTTTCCCATTTTTCCCAAAACCCCCGTTCCTCTCGCTCTCGCCCGCTTCTCGCATCCCATCGGTTCTCGGCTTCTCGCCACAACCAAAGGAACTCTCTCTGCTTCCACGCCATCGTCAAAGTCGCTTTTTACTCTCTAAACTGCCTTCGCTTCTCTTCTTGCTCAATTCTATTCCGAAGAACACAACCACACATGTTCTGCACTTCACAATCACACTCTTTGACGGTTTCATACCTCATCAATAACCTTGGCTTCACCCCACAATCTGCTCTAAACGCATCAAAACGGCATCGTTTCAAGACCCCACACAAGGCAGACTTAATAATCGCATTCTTCAAGACCCATGGATTCTCCCATTCCCAAATCGCTGCCATTGTTGCCAAGCTACCTAAGATACTTTCAGCCAATCCGGAAAGAATCCTGCCAAAGTTTCAATTTCTGGCCTCCAAAGGTGCTTCCACCGATGACATTGTTCTGCTATCCACTAGGAACCCTAGATTCTTGCATTTGAGCCTCAAGAACAACATAATCCCTACTTATGCAATGCTGAAAACCTTCTTTCAATCCGATCAGAAAACGCTCCGTTGCATTGCTTCTATCCCTGGTTTGTTTATGGAGGCTCGCTTGGTGAAAAATGTCAAGTTGTTGGCTGATGCAGGAGTCTCTGACTCCGCTATCGGCTATTTGTTGCGGACCAGAGTTTTAGTGCTCTTGTCTGCTGACTTGAGGAAGCAGGTGGATGAAATAAAGGAATTAGGGATTGATCCTTCAACGGTTAAGTTCGCCATAGCTTTGCAAGCCAAAAAGACTGTACCGAAATCACTGTGGGATGCAAAAGTCAATGTCTTGAAGAGCTGGGGTTGGTCTAAAGAAACAATGTCCGAAGCATTCAGGAGGAACCCTTTATGTATGCTATCATCTAAGGATAAGATTAATGAGGTGATGAAACTTTGGGTCAATCAGTTAGGTTGGGACCCTTTGGCTCTTGCCAAGATTCCATGGCTTTTTGGATATAATTTGGAGAGAAGGATCATTCCGAGGGCTTTTGTTCTCCAGTATTTACTTGCAAAAGGATTGAGAAACAAGAGTGACAATTTGTGTCTGCCGTTTTTTATTCCGGAAGACATGTTCCTTAAAAGATTTGTGGAAAGTTTTACAGAAGATATGTCTCAACTACTTAAGATATACCATGAGAAAAAAAAGATGTTAGCTCATTGTGCTAACGAGATAGGTGAAGATATCAAAGGTTCTCTTAATGATTGTGGAGTTGGAAATTTCAAGGTTCTCTTCAATGACCAAATGAGAGCAAAAGGTGTTCAGTAA 1611 0.4258 MHAASIQVKELQFSFSLIKKIYVVLVKVFLTYSAKIFTLFFPFPKIPSSSRPLLPSVLAPAGGTLSAFTPSAKSRFLLSKLPAFPSLLAQFLPFFYFSHFSQNPRSSRSRPLLASHRFSASRHNQRNSLCFHAIVKVAFYSLNCLRFSSCSILFRRTQPHMFCTSQSHSLTVSYLINNLGFTPQSALNASKRHRFKTPHKADLIIAFFKTHGFSHSQIAAIVAKLPKILSANPERILPKFQFLASKGASTDDIVLLSTRNPRFLHLSLKNNIIPTYAMLKTFFQSDQKTLRCIASIPGLFMEARLVKNVKLLADAGVSDSAIGYLLRTRVLVLLSADLRKQVDEIKELGIDPSTVKFAIALQAKKTVPKSLWDAKVNVLKSWGWSKETMSEAFRRNPLCMLSSKDKINEVMKLWVNQLGWDPLALAKIPWLFGYNLERRIIPRAFVLQYLLAKGLRNKSDNLCLPFFIPEDMFLKRFVESFTEDMSQLLKIYHEKKKMLAHCANEIGEDIKGSLNDCGVGNFKVLFNDQMRAKGVQ* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0388 536 SMART mt_12 219 249 IPR003690 GO:0003690|GO:0006355
Amo04g0388 536 SMART mt_12 390 421 IPR003690 GO:0003690|GO:0006355
Amo04g0388 536 SMART mt_12 254 286 IPR003690 GO:0003690|GO:0006355
Amo04g0388 536 SMART mt_12 422 456 IPR003690 GO:0003690|GO:0006355
Amo04g0388 536 Pfam mTERF 374 456 IPR003690 GO:0003690|GO:0006355
Amo04g0388 536 Pfam mTERF 206 355 IPR003690 GO:0003690|GO:0006355
Amo04g0388 536 Gene3D Transcription termination factor 3, mitochondrial 299 491 IPR038538 -
Amo04g0388 536 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 161 497 - -
Amo04g0388 536 PANTHER CGI-12 PROTEIN-RELATED 161 497 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0388 Amo-Chr4 7600643 7609952 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Amo04g0388 mTERF 1.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0388 K15032 - gmx:102666739 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1516 14 26402678 26404050 Amo04g0388 04 7600643 7609952 hybridization
Amo01g3487 01 107525656 107527128 Amo04g0388 04 7600643 7609952 PCT
Amo04g0388 04 7600643 7609952 Amo01g3487 01 107525656 107527128 PCT