Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0372 ATGGCTACTTCATTCAACATGATTAAGGATCTTGATATTGCTGTTGCTAATCAAGTTTGGCGTATCAAAGTGCGTGTCATCAAAATATGGTCTATTAATTTAGGCGAAGAGAAGTTCAGGAGACCTAACTTAGAGATGGTTGTTATGGATGAATTAGGTGATCGGATACAATGTTCTGTAAGGAATCCTTTGAGGAGATTATTTGAGCAGGAGTTAGTTGAGGGCAATGTGTACTCTGTTGCTAACTTCTCTATTGAACTTAATGATCAAAAGTACAAGCCAACCAATCATACTCTGCGTGTGTTCTTTAAAAGGGAATCTCAGATTCGTGTGTTAGTCGATATTAATTTCCCAAACAATATTTTTCACTTTGTGCCCAATGAAATGATACTTAATCATGATAATCCTCAGTCTCACTTGATAGATGTTATTGGGTTGTTGACTGGAAAGGGTGATATAATAGAGTTCAGTAAGAATGGAAAGAAGTCCATATACATGGTTATTGAGCTTGATGACATGCAATCTAAGGGTAAGATAAGGTGTACATTGTGGGAGGAGTTTGCTACTCAACTGGTGAAGCACATGGAGCAGTACCCTAATACTGAGTTCATTATTATTGTGCAGTTTGCCAAATTTAACCTGTTCAAGGGAACCATGGGCATATCTAATACAAACTACAACTCTACCTTATACATTAACGCTGATCTTAAAGAAGTTAAGGAATTTAGACAAAGGTTTATCATGGGTAATGACAAGCCATCTAACCAGCTTTCTCAAATTGCATCTGATTCATTGATTTCCCTTGAGCAAGATCTTATTAACCATACTCCTTACAAGTCTATAAGCGAACTTAAGGAGAGCACTGAGGGTGGAATATTTGTTACCATTGGAACTGTGATTTCTATTGACACTAGACTAGGTTGGTGGTACAAAGGGTGCAAGATGTGTTTTCATTCACTTAAAGAAGATGAGAATTCATATTATTGCCATGAATGTGATATTTATCCTAATACTCATGTTCCTCGTTTCTGCATTCAAATGAGAGTATCAGATGAGACAGACTCTGCTTCATTTATTGTTTATGACAAGGAAGCCTCCAAATTTCTTGAGATATCTGCTTCTGAGCTTCGTTTGAGACAGATATCAAAGGGTTGCGGCAAGGATGAATTTCCGGTTGAGATTAATTCATTTAGGGGTAAGAAGTTTCTATTCAAGATTTCTGTGAAGCTTGATGATATCAATGCTTTCCAGCCATGCAAGATTACTGTTTTGAAGTTGACTGAAGATCCAAATCTGCTCACTTCTTTTTCTTCCAAGTACAAGACATTTGATAACACCCCAATCGAAAATACTGAGTTGCAGAGTTTGCAAACTGATTCTACTGATAATTCTAAGGAGATTAGTTCACAGTCTTGCGAAATTATTTCTCTTGATGGCAATGATGACTTTGTAACTCCTAAGAGAGGTATGATAGCTGGTGTAACGGCAAAAAATTTGCTGGACATTTTCCCGGATAATGCCACTACTTCATCATCCAAATGCCGGAAGCTCTCCAAGGAGTCTGATTGTAGCTTTGTCAAAGAGCATGTTGATTAA 1596 0.3722 MATSFNMIKDLDIAVANQVWRIKVRVIKIWSINLGEEKFRRPNLEMVVMDELGDRIQCSVRNPLRRLFEQELVEGNVYSVANFSIELNDQKYKPTNHTLRVFFKRESQIRVLVDINFPNNIFHFVPNEMILNHDNPQSHLIDVIGLLTGKGDIIEFSKNGKKSIYMVIELDDMQSKGKIRCTLWEEFATQLVKHMEQYPNTEFIIIVQFAKFNLFKGTMGISNTNYNSTLYINADLKEVKEFRQRFIMGNDKPSNQLSQIASDSLISLEQDLINHTPYKSISELKESTEGGIFVTIGTVISIDTRLGWWYKGCKMCFHSLKEDENSYYCHECDIYPNTHVPRFCIQMRVSDETDSASFIVYDKEASKFLEISASELRLRQISKGCGKDEFPVEINSFRGKKFLFKISVKLDDINAFQPCKITVLKLTEDPNLLTSFSSKYKTFDNTPIENTELQSLQTDSTDNSKEISSQSCEIISLDGNDDFVTPKRGMIAGVTAKNLLDIFPDNATTSSSKCRKLSKESDCSFVKEHVD* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0372 531 CDD RPA1_DBD_B_like 142 247 - -
Amo04g0372 531 Gene3D - 269 435 IPR012340 -
Amo04g0372 531 SUPERFAMILY Nucleic acid-binding proteins 276 429 IPR012340 -
Amo04g0372 531 CDD RPA1_DBD_C 281 435 IPR013955 -
Amo04g0372 531 Gene3D - 115 256 IPR012340 -
Amo04g0372 531 Gene3D - 7 114 IPR012340 -
Amo04g0372 531 SUPERFAMILY Nucleic acid-binding proteins 4 116 IPR012340 -
Amo04g0372 531 Pfam Replication factor-A C terminal domain 294 427 IPR013955 -
Amo04g0372 531 CDD RPA1_DBD_A_like 21 109 - -
Amo04g0372 531 SUPERFAMILY Nucleic acid-binding proteins 136 246 IPR012340 -
Amo04g0372 531 PANTHER BNAC01G35430D PROTEIN 23 446 - -
Amo04g0372 531 Pfam Domain of unknown function DUF223 45 132 IPR003871 -
Amo04g0372 531 PANTHER REPLICATION FACTOR A 1, RFA1 23 446 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0372 Amo-Chr4 7055285 7058791 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0372 20 423 Core DNA Replication Machinery Family AT5G08020 23.810 3.70e-19 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0372 - - adu:107490971 1047.34