LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo04g0360	ATGGACCCTAGTGGATCGTACGCGGTCTCAGGAGGAGGAGCAACCCAAATGAAAATGACGATTCGGCCCTCCCACTCGCACCACCACTCTGAGAGCAGCAACAGCGACCGCGCACTCGACTGCAACCTCACCTCCCTCTGCGATCACATCCAATCCGAAGGCTTCAACTCCGGCGCCTTCTCCGACATCCTCCTCCACGCCCTCGGCTCCACCTTCCGCCTCCACCGCCTCCTCCTCTCCCGAAGCTCCTATTTCCGGAACATGCTTCATGGACCTTGGAAGGAAGCATCTGCACCGGTTGTGACTTTGCACGTGGACGATAAAAACGTTAACGAAGAGGCCATTACTATGGCATTGGCTTATCTCTATGGCCACCACCCTAAGCTTAACGACAACAATGCTTTCCGTGTTCTCGCTGCTGCTTCCTTCCTAGACCTTCAGGATTTGTGTGCAATATGTACGGACTTCATTATATCAGAGCTTTGGACTTCTAATTTCTTGGCTTACCAGGTGTTTGCCGAGAACCAGGACTATGGCATCCATGGGGAGCGTGTAAGAAATGCTTGTTGGGGCTACCTTTGTCAAAGTGGTGGCATGGAATTAAAAGAGGTGCTTCCTAAACTTTCATCTCAAACATTGCATGCATTACTGACCAGTGATGAACTATGGATACCAAGTGAAGAGAAGAGGTTTGAGTTGGCTTTGTATGTGTTCCTCGCAAAGAGTGCTCAGTGGAAGGCCAAACATCCTGAACATGGAAGTTCCAGTTCTGAGTCTGGAACTGATATCCATTCTGATTCTGATCACTCTAAGGGGAAGAGTGTATCTGACGGCTGCACTGATAAGAGGTTGGAAACTGATCTAGAGCAAATGAGTCTTAAAAGTGGTCTAAAGGATCCTAATGCCCGTAATCTTCTAGTTGAGCTTCCAGACTTCAACAATGCAGCTTCTAACTCCAATCAACAAAGTGAAGAAGCTTCATATACCAGCTCATCAAACCTGAAACCAACATACTCTTGCAACATGGAAGGGCCTTCATCAATGGGTGATTCATTATCTGATACAGATGGCATCAGAACATCATGTTCCTATGTTGAGATGCCTGTTGTTGCTGGAGCAAATGGAGTGGCTATGGAAGGGCCATCTGAGGAAGGATCTTGCTTCCATTTGGATAACAATAGTTGGATTGTTAGGGATCAATCTAGAAACCGTTTTTCATCAAATTCTTCTTCTAGCGGGGTCTCATCCAATGATTGGGGAAGATATGGAGCACCATTTTTTTCATGGGGTGGAAGAGTTGTTGGCAAAAGACGTCTTGAAGCTCACTCCAAAAGAAACTATGCAGATCATGGGGATGAATATGATGCATTTCTTAACATATTTGAAGGGGGCTCTCTCTTATACTGCAACATGTCTTTTGAGGCTCTTTTGAATGTCAGAAAGCAACTTGAAGAGTTAGGTTTCCCTTGCAAAGCTGTGAATGATGGTCTTTGGCTTCAGATGCTTCTTAGTCAGAGGGTGCAAGAAATTGCTGCTGATACCTGCAAAAGTTGCTCCCTTATGAGTATGGCTTGTACCTGCCGGCAACCATTTACATTTTCACATGGAGCTAATTCCACTGGATTTTACATTCAAGAACATAACCAGAATAATATGCATGCGAACATGGGCAATATATATGTTGCCGAGCCTTCTCCAGGTGAAGGAAATGGCATCTTTAGACCTGTACGAGTACATGTTAGAGGGGCTATAGATGGGCTTGCAGGTATTGGTCGTGGAACTACATTTGTTCCAGCAGCTGCTTCTGCTCCTACACGATTTGTCTTTTCTCGTGTACCATTTGGTGTTGGGAACAGAAACTACCAGCAATCTGCAGCCAATGATGATTCAGAGATGCGAACTGATCACAACGGCGACCTGTCTGGAGATGGATTGACAGCTTTGGTTGGATTAAGTCAAGGTGGGGTTAATGGAATAAATGTACATGGAGAACTTTCTCAAAGGGGATATGAAATGGACATGCAAGGCAGAATGTCTGGAACTGCAGGAGGCCCAAGTACTGGTGGTATTCCTATGCAGATGTTAGAGACACCAGAACATAACGGTGGAATAGAATGGGAGAATTCAAATAATTCATCTATATCATTGGATTTGAAAACGCCTTTAAGCCATTTCCCCCCTTTTCGCTTTGGGGTCCAATTTGAGGATGTGCACAGACTCGGTGATGGTCAGGTTAAGCATTCTCCAGAAATGTTCTATGCTGGTTCTTTATGGAAGGTCAGTGTACAGGCTTTTAATGATGAGGACCCCCAGGGAAGGCGTACACTGGGGTTGTTTCTTCATCGTAGGAAGGCAGAGATAACTGATATACATAGAAAGGTGCACATGTATGTTGACTCTCGTGAAAAGGTGACTGCTCGCTACCAGTTGATTTGTCCATCCAAGAGGGAGGTAATGGTGTTTGGAAGCTTTAAACAAACAGGCACTCTTCTACCTAAAGCTCCTAAAGGATGGGGTTGGCGAACTGCTCTATTATTTGATGAGCTTGCTGATCTTCTCCAAAATGGAGCCCTAAGGGTCATTGCTGTGGTGCAGCTTGTTTGA	2604	0.4551	MDPSGSYAVSGGGATQMKMTIRPSHSHHHSESSNSDRALDCNLTSLCDHIQSEGFNSGAFSDILLHALGSTFRLHRLLLSRSSYFRNMLHGPWKEASAPVVTLHVDDKNVNEEAITMALAYLYGHHPKLNDNNAFRVLAAASFLDLQDLCAICTDFIISELWTSNFLAYQVFAENQDYGIHGERVRNACWGYLCQSGGMELKEVLPKLSSQTLHALLTSDELWIPSEEKRFELALYVFLAKSAQWKAKHPEHGSSSSESGTDIHSDSDHSKGKSVSDGCTDKRLETDLEQMSLKSGLKDPNARNLLVELPDFNNAASNSNQQSEEASYTSSSNLKPTYSCNMEGPSSMGDSLSDTDGIRTSCSYVEMPVVAGANGVAMEGPSEEGSCFHLDNNSWIVRDQSRNRFSSNSSSSGVSSNDWGRYGAPFFSWGGRVVGKRRLEAHSKRNYADHGDEYDAFLNIFEGGSLLYCNMSFEALLNVRKQLEELGFPCKAVNDGLWLQMLLSQRVQEIAADTCKSCSLMSMACTCRQPFTFSHGANSTGFYIQEHNQNNMHANMGNIYVAEPSPGEGNGIFRPVRVHVRGAIDGLAGIGRGTTFVPAAASAPTRFVFSRVPFGVGNRNYQQSAANDDSEMRTDHNGDLSGDGLTALVGLSQGGVNGINVHGELSQRGYEMDMQGRMSGTAGGPSTGGIPMQMLETPEHNGGIEWENSNNSSISLDLKTPLSHFPPFRFGVQFEDVHRLGDGQVKHSPEMFYAGSLWKVSVQAFNDEDPQGRRTLGLFLHRRKAEITDIHRKVHMYVDSREKVTARYQLICPSKREVMVFGSFKQTGTLLPKAPKGWGWRTALLFDELADLLQNGALRVIAVVQLV*	868

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo04g0360	867	Pfam	BTB/POZ domain	55	159	IPR000210	GO:0005515
	Amo04g0360	867	MobiDBLite	consensus disorder prediction	249	280	-	-
	Amo04g0360	867	MobiDBLite	consensus disorder prediction	262	280	-	-
	Amo04g0360	867	SMART	BTB_4	61	161	IPR000210	GO:0005515
	Amo04g0360	867	PANTHER	BTB/POZ DOMAIN-CONTAINING PROTEIN	13	867	-	-
	Amo04g0360	867	MobiDBLite	consensus disorder prediction	314	354	-	-
	Amo04g0360	867	PANTHER	BTB/POZ DOMAIN-CONTAINING PROTEIN	13	867	-	-
	Amo04g0360	867	SUPERFAMILY	POZ domain	53	159	IPR011333	-
	Amo04g0360	867	Gene3D	Potassium Channel Kv1.1; Chain A	29	194	IPR011333	-
	Amo04g0360	867	ProSiteProfiles	BTB domain profile.	61	131	IPR000210	GO:0005515

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	TRAF	Amo04g0360		BTB	1.1e-13	CL0033

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo04g0360	-		-	adu:107483601	1711.04