Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0314 ATGAGGTTCGAGAATACAGCTGGTGCAAAAGGGCACCAAGCAGTTGCACTCAGAAATGTAGGAGATTTTTCAGCTTTTTATAACGGCCACATACATGGTTATCAAGACACTTTGTATGTTCAAGCTAATAGACAATTCTACCACAACTACAAAATTGCTGGAACAGTTGACTTTATCTTCGGTACATCCCCCGCCGTGATCCAGAGAAGCAAGCTCATCGTGAGGATGCCCTTGCCAACTCAGTTCAATGTGTTGGTCGCAGATGGCACCGTCGAAAGGAACATGACTACTGGCATTGTGATTCAGGAATACCAGATTGTTCCAGATTCAATGTTTGACCATGTCAAATACCAAATCAAGACTTATTTGGGTAGGCCATGGAAAGAAGGATCGAGAGCAGTAATTATAGAATCATATCTGGGTGATTGGATTAATCCGGAAGGGTGGGCCCCTCATGCTACCAATGAGATGAAAGGCTTCTTAGATATTAGTGAGTATGAAAATACCGGACCAGCTGCTTCAGTTCATGGAAGAATCAAGTGGAAGGGATATCATGGTATAATAACCAAGAATGAAGCCATGCGATTCACTGTTGGTGAATTCCTCAAGGGTGGACCTAACAATAGTGCTGACCAATGGTTGAACGCTCTTGGTGTTCCTTTTGAAAGTGGTTTTGTAAGACCATAA 687 0.4279 MRFENTAGAKGHQAVALRNVGDFSAFYNGHIHGYQDTLYVQANRQFYHNYKIAGTVDFIFGTSPAVIQRSKLIVRMPLPTQFNVLVADGTVERNMTTGIVIQEYQIVPDSMFDHVKYQIKTYLGRPWKEGSRAVIIESYLGDWINPEGWAPHATNEMKGFLDISEYENTGPAASVHGRIKWKGYHGIITKNEAMRFTVGEFLKGGPNNSADQWLNALGVPFESGFVRP* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0314 228 ProSitePatterns Pectinesterase signature 2. 52 61 IPR033131 -
Amo04g0314 228 Gene3D - 1 225 IPR012334 -
Amo04g0314 228 PANTHER PECTINESTERASE 2 225 - -
Amo04g0314 228 PANTHER PECTINESTERASE 2 225 - -
Amo04g0314 228 SUPERFAMILY Pectin lyase-like 2 222 IPR011050 -
Amo04g0314 228 Pfam Pectinesterase 1 204 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0314 Amo-Chr4 5434008 5434694 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0314 1 225 Carbohydrate Esterase AT3G14310 45.778 1.05e-59 196