Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0304 ATGGAAAAGAAGGGAAAAATCATAGTTTTAGTGGTTGTTTCGCTTTCGCTCATCCTTGTAGCGGGGGTTGCCACCGGGGTCATCATAGTCGTTAATAACAAAAAAAGCAATGGCGCTGAAGTGCAAAACACTAAAGAAAGATTCACGAGTCTCATGTGCCGCAACACACAAGAGGATCAAAACCTCTGTCGCGAGGTTCTAAGCCAAGTTGATGGTGCCTCTTCTTCCGACCCGAAAGCATACATCGACGCCGCCGTGAACGATATCAGAGATGGTGTCACCACCGCCCTAAAGATGATGACAACTGAGGAGGAGTTCTCCAAAGATGACAACGGAATCAAGATGGCCATTGATGGTTGCAAAGAAGTCATGGAGTCCGCATTGAGCAGCCTTGACCTTTTCAGCAACATGCTTCGCAGTAATCACGACATTAACTCCGTGCAAATGCAAAGCCCCGACCTCAGAAACTGGCTTAGCGCTGTTATCTCATATCAGCAATCTTGTGTTGACATTTTTGAGGATCAAAATGAAGGAGAGAGAAAAATCAAAGAACAACTACAAAGCAAAAGTTTGGATCGTGTTGAGAAGGTTTCCATCATAACTCTCGATATTGTTACTGGTTTGGCTAAGATCATTGAAGATCTTGGTCTGCATGTGGAAATAAAACCCATTGCTTCTTCTGGGCGTGTTCTTCGCGAAGAGGTTGATAACGAGGGGTTTTCCGATTGGTTTTCCTCTTCAGATCGCAAGCTGTTGGCGAAGGATGTGAAGTTTCATGTTCCAAATGTAGTGGTTGCTAAAGATGGTAGTGGGAACTTTAGGATGGTTCAGGATGCAATTAACTCGTATCCAAAGGCAAAGAATTTTCAGGGAAGGTACATTATCTATGTTAAGGCGGGGATCTATAAGGAGAATTGTACGGTTCCATCTCATGCAATGAACGTTTTCATGTATGGAGATGGCCCTACTAAGACCATTATAACTGCTAGTATGAGCAATGTCACCCACAACCTCAAGACCATGTTTACTGCCACTTTCGTGAATAAAGCGGGAATGTTTCTTGCGAAGGACATGAGATTCGAGAACGCAGCTGGTGCAGAAGGGCACCAAGCAGTTGCACTCAGAAATGTGGGAGATTTTTCAGCTTTCTATAACTGCCACATACATGGTTATCAAGACACCTTGTATGTTCAAGCCAACAGGCAATTCTACCGCAATTATGAAATCGCTGGAACAGTTGACTTTATTTTCGGTACATCTCCCGCTGTGATCCAAAGAAGCAAGCTCATTGTGAGAAAGCCCTTGCCAACTCAGTTCAATGTGTTGATCGCAGATGGCACCGTCCAGAGGAACATGACTACTGGCATTGTGATTCAGGGATGCCAGATTGTTCCAGATCCAATGTTTGACCCTGTCAAGTACCAAATGAAGACTTATTTGGGTAGGCCATGGAAGGAAGGATCGAGAGTAGTAATCATGGAATCATATCTGGGTGACTGGATTAATCTGGAAGGGTGGGCCCCTCATGATGGCAATGAAATGAAAGGCTTCTTAGATATTTGTGAGTATGGAAATACCGGACCTGCTGCTTTAGTTCATGGAAGAATTAAGTGGAAAGGGTATCGTGGTATGATAACTAAGAATGAAGCCATGCGATTCACTGTTGCTGAATTCCTTAAGGGTGGACCTAACAATGGTGCTGACAGATGGTTGAACGCTCTTGGTGTTCCTTTTGACAGTGATTTTCTAAGACCATAA 1758 0.4397 MEKKGKIIVLVVVSLSLILVAGVATGVIIVVNNKKSNGAEVQNTKERFTSLMCRNTQEDQNLCREVLSQVDGASSSDPKAYIDAAVNDIRDGVTTALKMMTTEEEFSKDDNGIKMAIDGCKEVMESALSSLDLFSNMLRSNHDINSVQMQSPDLRNWLSAVISYQQSCVDIFEDQNEGERKIKEQLQSKSLDRVEKVSIITLDIVTGLAKIIEDLGLHVEIKPIASSGRVLREEVDNEGFSDWFSSSDRKLLAKDVKFHVPNVVVAKDGSGNFRMVQDAINSYPKAKNFQGRYIIYVKAGIYKENCTVPSHAMNVFMYGDGPTKTIITASMSNVTHNLKTMFTATFVNKAGMFLAKDMRFENAAGAEGHQAVALRNVGDFSAFYNCHIHGYQDTLYVQANRQFYRNYEIAGTVDFIFGTSPAVIQRSKLIVRKPLPTQFNVLIADGTVQRNMTTGIVIQGCQIVPDPMFDPVKYQMKTYLGRPWKEGSRVVIMESYLGDWINLEGWAPHDGNEMKGFLDICEYGNTGPAALVHGRIKWKGYRGMITKNEAMRFTVAEFLKGGPNNGADRWLNALGVPFDSDFLRP* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0304 585 Pfam Pectinesterase 262 561 IPR000070 GO:0030599|GO:0042545
Amo04g0304 585 ProSitePatterns Pectinesterase signature 2. 409 418 IPR033131 -
Amo04g0304 585 TIGRFAM PME_inhib: pectinesterase inhibitor domain 35 206 IPR006501 GO:0004857
Amo04g0304 585 Gene3D - 258 582 IPR012334 -
Amo04g0304 585 Gene3D Invertase/pectin methylesterase inhibitor family protein 46 209 IPR035513 -
Amo04g0304 585 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 52 202 IPR035513 -
Amo04g0304 585 PANTHER PECTINESTERASE 12 578 - -
Amo04g0304 585 SUPERFAMILY Pectin lyase-like 262 578 IPR011050 -
Amo04g0304 585 SMART PMEI_2 44 204 IPR006501 GO:0004857
Amo04g0304 585 CDD PMEI-like_3 51 210 - -
Amo04g0304 585 PANTHER PECTINESTERASE 12 578 - -
Amo04g0304 585 Pfam Plant invertase/pectin methylesterase inhibitor 52 204 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0304 Amo-Chr4 5239816 5241954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0304 76 577 Carbohydrate Esterase AT4G33230 39.882 3.68e-110 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0304 K01051 - gmx:100815015 585.874