Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0297 ATGAAAAACTGGCAATTTGGAAAGTTGCAGTGGTCTTCTCATGAATTTGCTTTGTTTCTGCAGAAATGCTTGAAGGCCAAAGGCTTAAGACCTGGCATGCAGGTTCATGCCACGTTGCTTACTTCTGGAACCAACATGAACACTTTCTCTCTGAGTTCAAAGCTTCTTGCTGTGTATGCTAGTTGTGGTGATCTTAAATCAGCAAGGCTTTTGTTCCCGAAAATTGAGAACCCAAATGTCTTTGCTTTCAATTGGATGGTTCTTGGTTTGGCCTATAACGGTTACTATGATGATGCACTTTGGTACTTTCGTTCGATGCTTCAACTTGGTCACTCGGGCAACAAGTTCACCTTTCCCATTGTTCTTAAGGCCTGCGTTGGGTTAATGGATCTGAACAAGGGGATGCAGATATCTATTGTAAATGTGGACGGGTTTCATATGCCTGCCAAGTGTTTGATAGAATGGCTAATGAAGAAAGAGGGGCTTGTTCCTGATCTGGTTGCATGGAATGCGTTGATTTCTGGCTTCGTGCAGAATCATCAAGACATGGAAGCATTGAAGTTGTTTTGGGAGATGCTAAATTCAGGGATTCAACCTAATGAAAATGTATTTGACAACATTCCGAATAAGAATGCTGCATCATGGAATGCAATGATTGATTGCTATGGGAAATATGGGATGATTGATTCCTTCTTGGAGCTGGTTAGAAAAATGCAAGAGCTAGGTTGGAAACTTGAGGAAGGTGATGAAGGAGAAAAATGTTCACAGGAGTCTGGTTTTAGTTGGCTTGAAAAGCCAGCAACAGCAAGGAGGACTGAACGTTTTGATCGTACAACATTACCAACATGTATGTACTGGCTAACTGGGAGATGCAACAGAAATCCTTGTAGATTTTCGCATAGCTTACCAACATTGCATCCAATCTGTTTGTCTATTGAGAAGCCACCCAAGTGTGAACAAACGGCAGTATTGATTGAAAAGACTAAAGATGTGGCCCCTGTTGCTATGGCTCCCGTGGAGGAATCACGCAGTATCTGTAAATATTGGATGACTGACAACAGTGTGCATGGTTACCTGTGTCAGAATTTGCATTCATGGTTTTATGGTGATGAGTTTACTACACTTGCAAAGCTTCATGAACACAAGAAGGTTGTCACTGGAATCGCACTGCCGTCTGGTTCAGACAAACTCTATTCTAGTAGCACTGATGGCACACATGCTGTGAAGGCATGGAATATTCAGACCGGTGCACATGTTACTTTTGATGGACCTAAAGGACAAGTCCTTTCCGTGAATGTTGGCAATGATATCCTCCTTGCTGGAGCAGAGGATGGTGCTATTTATTCTTTGAGATGCAACTGTGATCCCAAAGCTGAATCTCCTTTCGAACCGGTTGCAGCACTAAGTGGCCATACTAAACCGGTGGTTTATTGCTATTGGATGCTACAAGATGCTTTATTCTGGTGCACGATGACACTTAATGGGCATACTGACGAAATGACATCACTTATTTGCTGGGAGGATTATTTGTTATCGAGTTCATCTGATTGCACACCGCACCAGTCAATGTCTGGGTGTGCACTAAGGAGGAAACTCTGGAAGTGGCATACACTCACATTGAGGGAAATGTTTTTAGAGAGAGGGCGACTATTTACAAGACAAGAAGTTCGATCTTGCGAGATAGGCCCTAGACTTGGAGGACTCTTCGTCAATGAGATGGGACTGGTTTGCTGA 1734 0.4296 MKNWQFGKLQWSSHEFALFLQKCLKAKGLRPGMQVHATLLTSGTNMNTFSLSSKLLAVYASCGDLKSARLLFPKIENPNVFAFNWMVLGLAYNGYYDDALWYFRSMLQLGHSGNKFTFPIVLKACVGLMDLNKGMQISIVNVDGFHMPAKCLIEWLMKKEGLVPDLVAWNALISGFVQNHQDMEALKLFWEMLNSGIQPNENVFDNIPNKNAASWNAMIDCYGKYGMIDSFLELVRKMQELGWKLEEGDEGEKCSQESGFSWLEKPATARRTERFDRTTLPTCMYWLTGRCNRNPCRFSHSLPTLHPICLSIEKPPKCEQTAVLIEKTKDVAPVAMAPVEESRSICKYWMTDNSVHGYLCQNLHSWFYGDEFTTLAKLHEHKKVVTGIALPSGSDKLYSSSTDGTHAVKAWNIQTGAHVTFDGPKGQVLSVNVGNDILLAGAEDGAIYSLRCNCDPKAESPFEPVAALSGHTKPVVYCYWMLQDALFWCTMTLNGHTDEMTSLICWEDYLLSSSSDCTPHQSMSGCALRRKLWKWHTLTLREMFLERGRLFTRQEVRSCEIGPRLGGLFVNEMGLVC* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0297 577 PANTHER - 406 518 IPR044715 -
Amo04g0297 577 PANTHER - 276 405 IPR044715 -
Amo04g0297 577 SMART c3hfinal6 342 366 IPR000571 GO:0046872
Amo04g0297 577 SMART c3hfinal6 278 302 IPR000571 GO:0046872
Amo04g0297 577 Gene3D Tetratricopeptide repeat domain 1 148 IPR011990 GO:0005515
Amo04g0297 577 SMART WD40_4 371 412 IPR001680 GO:0005515
Amo04g0297 577 SMART WD40_4 414 451 IPR001680 GO:0005515
Amo04g0297 577 SMART WD40_4 486 530 IPR001680 GO:0005515
Amo04g0297 577 Gene3D - 364 558 IPR015943 GO:0005515
Amo04g0297 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Amo04g0297 577 Pfam PPR repeat 86 110 IPR002885 -
Amo04g0297 577 Pfam PPR repeat 214 242 IPR002885 -
Amo04g0297 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 199 IPR002885 -
Amo04g0297 577 TIGRFAM PPR: pentatricopeptide repeat domain 167 201 IPR002885 -
Amo04g0297 577 TIGRFAM PPR: pentatricopeptide repeat domain 214 244 IPR002885 -
Amo04g0297 577 SUPERFAMILY WD40 repeat-like 368 518 IPR036322 GO:0005515
Amo04g0297 577 Gene3D Tetratricopeptide repeat domain 149 247 IPR011990 GO:0005515
Amo04g0297 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
Amo04g0297 577 ProSiteProfiles Zinc finger C3H1-type profile. 277 303 IPR000571 GO:0046872
Amo04g0297 577 Pfam PPR repeat family 164 201 IPR002885 -
Amo04g0297 577 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 406 518 - -
Amo04g0297 577 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 276 405 - -
Amo04g0297 577 Gene3D - 276 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0297 Amo-Chr4 5112333 5117272 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0297 24 240 Miscellaneous Gene Families AT4G11690 26.267 3.48e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo04g0297 PPR_2 1.4e-08 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0297 - - ahf:114927751 398.667