Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo04g0297 | ATGAAAAACTGGCAATTTGGAAAGTTGCAGTGGTCTTCTCATGAATTTGCTTTGTTTCTGCAGAAATGCTTGAAGGCCAAAGGCTTAAGACCTGGCATGCAGGTTCATGCCACGTTGCTTACTTCTGGAACCAACATGAACACTTTCTCTCTGAGTTCAAAGCTTCTTGCTGTGTATGCTAGTTGTGGTGATCTTAAATCAGCAAGGCTTTTGTTCCCGAAAATTGAGAACCCAAATGTCTTTGCTTTCAATTGGATGGTTCTTGGTTTGGCCTATAACGGTTACTATGATGATGCACTTTGGTACTTTCGTTCGATGCTTCAACTTGGTCACTCGGGCAACAAGTTCACCTTTCCCATTGTTCTTAAGGCCTGCGTTGGGTTAATGGATCTGAACAAGGGGATGCAGATATCTATTGTAAATGTGGACGGGTTTCATATGCCTGCCAAGTGTTTGATAGAATGGCTAATGAAGAAAGAGGGGCTTGTTCCTGATCTGGTTGCATGGAATGCGTTGATTTCTGGCTTCGTGCAGAATCATCAAGACATGGAAGCATTGAAGTTGTTTTGGGAGATGCTAAATTCAGGGATTCAACCTAATGAAAATGTATTTGACAACATTCCGAATAAGAATGCTGCATCATGGAATGCAATGATTGATTGCTATGGGAAATATGGGATGATTGATTCCTTCTTGGAGCTGGTTAGAAAAATGCAAGAGCTAGGTTGGAAACTTGAGGAAGGTGATGAAGGAGAAAAATGTTCACAGGAGTCTGGTTTTAGTTGGCTTGAAAAGCCAGCAACAGCAAGGAGGACTGAACGTTTTGATCGTACAACATTACCAACATGTATGTACTGGCTAACTGGGAGATGCAACAGAAATCCTTGTAGATTTTCGCATAGCTTACCAACATTGCATCCAATCTGTTTGTCTATTGAGAAGCCACCCAAGTGTGAACAAACGGCAGTATTGATTGAAAAGACTAAAGATGTGGCCCCTGTTGCTATGGCTCCCGTGGAGGAATCACGCAGTATCTGTAAATATTGGATGACTGACAACAGTGTGCATGGTTACCTGTGTCAGAATTTGCATTCATGGTTTTATGGTGATGAGTTTACTACACTTGCAAAGCTTCATGAACACAAGAAGGTTGTCACTGGAATCGCACTGCCGTCTGGTTCAGACAAACTCTATTCTAGTAGCACTGATGGCACACATGCTGTGAAGGCATGGAATATTCAGACCGGTGCACATGTTACTTTTGATGGACCTAAAGGACAAGTCCTTTCCGTGAATGTTGGCAATGATATCCTCCTTGCTGGAGCAGAGGATGGTGCTATTTATTCTTTGAGATGCAACTGTGATCCCAAAGCTGAATCTCCTTTCGAACCGGTTGCAGCACTAAGTGGCCATACTAAACCGGTGGTTTATTGCTATTGGATGCTACAAGATGCTTTATTCTGGTGCACGATGACACTTAATGGGCATACTGACGAAATGACATCACTTATTTGCTGGGAGGATTATTTGTTATCGAGTTCATCTGATTGCACACCGCACCAGTCAATGTCTGGGTGTGCACTAAGGAGGAAACTCTGGAAGTGGCATACACTCACATTGAGGGAAATGTTTTTAGAGAGAGGGCGACTATTTACAAGACAAGAAGTTCGATCTTGCGAGATAGGCCCTAGACTTGGAGGACTCTTCGTCAATGAGATGGGACTGGTTTGCTGA | 1734 | 0.4296 | MKNWQFGKLQWSSHEFALFLQKCLKAKGLRPGMQVHATLLTSGTNMNTFSLSSKLLAVYASCGDLKSARLLFPKIENPNVFAFNWMVLGLAYNGYYDDALWYFRSMLQLGHSGNKFTFPIVLKACVGLMDLNKGMQISIVNVDGFHMPAKCLIEWLMKKEGLVPDLVAWNALISGFVQNHQDMEALKLFWEMLNSGIQPNENVFDNIPNKNAASWNAMIDCYGKYGMIDSFLELVRKMQELGWKLEEGDEGEKCSQESGFSWLEKPATARRTERFDRTTLPTCMYWLTGRCNRNPCRFSHSLPTLHPICLSIEKPPKCEQTAVLIEKTKDVAPVAMAPVEESRSICKYWMTDNSVHGYLCQNLHSWFYGDEFTTLAKLHEHKKVVTGIALPSGSDKLYSSSTDGTHAVKAWNIQTGAHVTFDGPKGQVLSVNVGNDILLAGAEDGAIYSLRCNCDPKAESPFEPVAALSGHTKPVVYCYWMLQDALFWCTMTLNGHTDEMTSLICWEDYLLSSSSDCTPHQSMSGCALRRKLWKWHTLTLREMFLERGRLFTRQEVRSCEIGPRLGGLFVNEMGLVC* | 578 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo04g0297 | 577 | PANTHER | - | 406 | 518 | IPR044715 | - | |
Amo04g0297 | 577 | PANTHER | - | 276 | 405 | IPR044715 | - | |
Amo04g0297 | 577 | SMART | c3hfinal6 | 342 | 366 | IPR000571 | GO:0046872 | |
Amo04g0297 | 577 | SMART | c3hfinal6 | 278 | 302 | IPR000571 | GO:0046872 | |
Amo04g0297 | 577 | Gene3D | Tetratricopeptide repeat domain | 1 | 148 | IPR011990 | GO:0005515 | |
Amo04g0297 | 577 | SMART | WD40_4 | 371 | 412 | IPR001680 | GO:0005515 | |
Amo04g0297 | 577 | SMART | WD40_4 | 414 | 451 | IPR001680 | GO:0005515 | |
Amo04g0297 | 577 | SMART | WD40_4 | 486 | 530 | IPR001680 | GO:0005515 | |
Amo04g0297 | 577 | Gene3D | - | 364 | 558 | IPR015943 | GO:0005515 | |
Amo04g0297 | 577 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 211 | 245 | IPR002885 | - | |
Amo04g0297 | 577 | Pfam | PPR repeat | 86 | 110 | IPR002885 | - | |
Amo04g0297 | 577 | Pfam | PPR repeat | 214 | 242 | IPR002885 | - | |
Amo04g0297 | 577 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 165 | 199 | IPR002885 | - | |
Amo04g0297 | 577 | TIGRFAM | PPR: pentatricopeptide repeat domain | 167 | 201 | IPR002885 | - | |
Amo04g0297 | 577 | TIGRFAM | PPR: pentatricopeptide repeat domain | 214 | 244 | IPR002885 | - | |
Amo04g0297 | 577 | SUPERFAMILY | WD40 repeat-like | 368 | 518 | IPR036322 | GO:0005515 | |
Amo04g0297 | 577 | Gene3D | Tetratricopeptide repeat domain | 149 | 247 | IPR011990 | GO:0005515 | |
Amo04g0297 | 577 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 79 | 113 | IPR002885 | - | |
Amo04g0297 | 577 | ProSiteProfiles | Zinc finger C3H1-type profile. | 277 | 303 | IPR000571 | GO:0046872 | |
Amo04g0297 | 577 | Pfam | PPR repeat family | 164 | 201 | IPR002885 | - | |
Amo04g0297 | 577 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 | 406 | 518 | - | - | |
Amo04g0297 | 577 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 | 276 | 405 | - | - | |
Amo04g0297 | 577 | Gene3D | - | 276 | 363 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo04g0297 | Amo-Chr4 | 5112333 | 5117272 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo04g0297 | 24 | 240 | Miscellaneous Gene Families | AT4G11690 | 26.267 | 3.48e-11 | 63.9 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Amo04g0297 | PPR_2 | 1.4e-08 | CL0020 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo04g0297 | - | - | ahf:114927751 | 398.667 |