Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0289 ATGTGCGGAGGTGCTATCATCTCAGACTTCATTGGTGTCAAGCGTGGCCGGAAATTGGTTTCTCAGGACTTATGGGCTGAGCTCGATCCTTTCTCCGACTTCCTTGGTTTTGACGCCGCCACGGTCACCGCCAACAACTCCAACAACAAGGATCAGCCACCAATTCCTCAAATCCCAGATAACAACAACAACAACAACAAAGTGGTAGCATGTGACAAGGTACTAGGAAAGGAAAAAACGGTTGTTGGTGGTGGCGCAGAAGATAAGAAGACGAAAGGTCCCAATCCACGTCAGAGGGTCCGTAAGAACGTCTACAGAGGAATCAGACAGAGGCCCTGGGGCAAGTGGGCTGCAGAGATAAGGGACCCACACAAAGGAGTCCGTGTCTGGCTCGGCACGTTCAACACTGCCGAAGAGGCCGCTAGAGCCTACGACGACGCTGCCAGACGCATCCGCGGCAACAAAGCCAAGCTCAATTTTCCGGATGCTTCTGAGGACAACGTCGTGGTAGCCCCTCCATTGGCCAAGAAGCAGTGTCTTGGCAATGAGATGCTGTCTCAGGTCGAAATTCAGTCACTTGTGCCACCACTTATCTCTACCGTGCAAACTGGCAGCGACAATGGAAGCATAGAGGGATTGGATTCTGACCTATCACAGCAGATCTCGGATCTTGAATGGTTTCTCGGATCGGAGAATGAGCAACCGTTGCAAATAGGTGGTGATGCCGTTTGGAACGACGTTAACAACTACAACGATAACAACAATAATATGGACCTGTGGATGCTGGACGACGTCGTTATGCCCAACCGTTACATGGTGTAA 822 0.5097 MCGGAIISDFIGVKRGRKLVSQDLWAELDPFSDFLGFDAATVTANNSNNKDQPPIPQIPDNNNNNNKVVACDKVLGKEKTVVGGGAEDKKTKGPNPRQRVRKNVYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFNTAEEAARAYDDAARRIRGNKAKLNFPDASEDNVVVAPPLAKKQCLGNEMLSQVEIQSLVPPLISTVQTGSDNGSIEGLDSDLSQQISDLEWFLGSENEQPLQIGGDAVWNDVNNYNDNNNNMDLWMLDDVVMPNRYMV* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0289 273 PANTHER EREBP TRANSCRIPTION FACTOR 1 171 - -
Amo04g0289 273 MobiDBLite consensus disorder prediction 45 65 - -
Amo04g0289 273 Pfam AP2 domain 104 153 IPR001471 GO:0003700|GO:0006355
Amo04g0289 273 PRINTS Ethylene responsive element binding protein signature 105 116 IPR001471 GO:0003700|GO:0006355
Amo04g0289 273 PRINTS Ethylene responsive element binding protein signature 127 143 IPR001471 GO:0003700|GO:0006355
Amo04g0289 273 Gene3D AP2/ERF domain 104 162 IPR036955 GO:0003700|GO:0006355
Amo04g0289 273 ProSiteProfiles AP2/ERF domain profile. 104 161 IPR001471 GO:0003700|GO:0006355
Amo04g0289 273 PANTHER DNA-BINDING DOMAIN 1 171 IPR044808 GO:0003700|GO:0009873
Amo04g0289 273 SUPERFAMILY DNA-binding domain 104 162 IPR016177 GO:0003677
Amo04g0289 273 SMART rav1_2 104 167 IPR001471 GO:0003700|GO:0006355
Amo04g0289 273 CDD AP2 105 163 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0289 Amo-Chr4 4936058 4938582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0289 1 266 AP2-EREBP Transcription Factor Family AT3G16770 42.123 1.23e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Amo04g0289 AP2 4.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0289 K09286 - gmx:100817253 234.187