Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0288 ATGGCGACTGAGCAGTTAATGTCCGACGGCGGCGCCCACCGTTACTTCCCTATGAAACCGGAGCAGCCGCCGTCTCCTCCGGCGGCGGCGGAAGAGATGTCGTCTGTTCCGTCTTTCCGACATGGAGGCGCCGGCGAGGCTACTCGGATTTTCGACGAACTTCCCAAGGCCACCATCGTCTCCGTCTCTCGCCCTGACGCCAGCGACATAAGCCCTATGCAGCTCTCTTACACCATTCGGTTTCAGTACAAACAGTTCAAGTGGGAGCTAGTGAAGAAAGCTTCTCAAGTATTTTATTTGCATTTTGCGTTAAAGAAGCGTGCCTTTTTTGAGGAAATTCATGAGAAGCAAGAACAGGTTAAAGAATGGCTTCAAAATCTAGGAATAGGAGAGCACACTACTATGGTGCATGATGACGATGAAGCTGATGATGAAACATTTGCTTCACATGCTGATGAATATGCAAAAAACAGAGATGTTCCATCTAGTGCTGCTCTACCAATTATACGACCAGCCTTAGGTAGGCAGCAGTCTGTGTCAGACAGGGCAAAGAGTGCAATGCAAGGATATCTGAATCACTTTTTGGGAAATATCAGTATTGTTAACTCTCCAGAGGTCTGCAAGTTTTTAGAGGTATCGAAGCTATCTTTTTTGCCTGAATATGGACCTAAGCTGAAAGAAGATTATGTAATGGTGAAACATCTGCCCAAAATTCCAAAGGATGATGATTCCAGAAAGTGTTGTACATCTAGCTGTTTTAGTTGTTGTAATGACAACTGGCAAAAGGTATGGGCTGTATTGAAACCTGGATTCTTGGCATTGCTGGCAGATCCTTTTGATAAGCAGCCCTTAGACATTATTGTCTTTGATGTGCTGCCTCCATCGGATGGGAATGGGGATGGTCGTCTGTCACTGGCTAGTGAAATAAAGGAACGAAATCCTTTACGCCATTCATTCAAGGTGACKTGCGGKATCCGGAGCATTAGAATTAGAGGGAAAAGTAGCAGTAAAGTTAAAGATTGGGTWGCAGCAATTAATGATGCTGGACTTAGGCCTCCTGAAGGCTGGTGTTATCCTCACCGCTATGGGTCATTTGCTCCTCCAAGAGGCTTAATTGAAGATGGTAGTCAAGCCCAATGGTTCGTGGATGGGCAAGCAGCATTTGATGCAATTGCTTCTTCAATTGAGGATGCAAGATCAGAGATATTCATCTGTGGATGGTGGGTATGCCCAGAACTGTATCTCAGGCGACCTTTTGACATTCATGCTTCATCAAGACTTGATAATTTGTTGGAAGCAAAGGCTAAGCAAGGGGTTCAGATCTACATTCTTCTGTACAAAGAGGTGGCTCTTGCTTTGAAAATCAACAGTGTCTATAGCAAGAGAAAGCTTCTTAGCATTCATGAGAACGTGAGGGTACTACGCTATCCTGATCACTTTTCTTCTGGTGTTTATCTATGGTCTCACCATGAAAAACTGGTCATTGTCGATAACCATATTTGCTTCATTGGAGGAYTGGATTTGTGCTTTGGCCGTTATGACTCATCTGAGCATAAAGTGGGGGATTGCCCTCCTCTAATCTGGCCTGGAAAGGACTTTTATAACCCTAGGGAATCTGAACCTAATTCATGGGAAGATACAATGAAAGATGAATTGGATCGTAGAAATTATCCTCGTATGCCTTGGCATGATGTTCATTGCGCCCTTTGGGGACCACCTTGTCGTGATATTGCTCGGCACTTTGTTCAAAGATGGAATTATGCRAAGAGGAATAAAGCTCCGTATGAGGAAGCAATACCTTTACTTATGCCTCAGCATCATATGGTTATTCCACATTACTTGGGAAGAAGCACTGAGATGGAGATTGAAAACAATAATGCTGAGAATCATAGAGTCATCAAGAGAGAAGATTCATTTTCTTCATTATCCCAAGAACAAGATGTTCCTCTACTTTTGACTCGTGATGAGTCTGAAGGAGACCCCAAAATGAACGGGTTAAACTCATTCATACATCACGTTGATAAGCCAATAAAGGTCGGTGGTGGTCTTCCTTTCTCTTTTCGGAGGGTGAAAATTGAAGCTGTTGGTCAAGACACCCCAATGAAGGGCTTTGTAGATGATCTTGGATATATGCATTATGATGAGAAAAAGTCTCTGGATAGAGTGCCTCATGTTGAGCAACAAAGTACTGGTCCAGAATGGTGGGAAACACAAGAGCGTGGTGATCAGGGAGATTTTGCAGATGAATCAGGGCAAGTTGGCCCTCGTGTTTCCTGCCGTTGTCAGGTTATTAGGAGCGTCAGTCAATGGTCTGCTGGAACAAGCCAAACGGAAGAGAGCATACACAATGCCTATTGCTCTCTTATTGAAAAAGCAGAAYACTTCATCTACATTGAGAATCAATTTTTTATCTCAGGTCTTTCTGGAGATGAAATGATTCGGAACCGTGTTTTGGAAGCTTTGTATCGACGGATTATGCTAGCATACAATGAAAATAAATCCTTTCGGGTTATCATTGTCATACCTCTCCTACCTGGCTTCCAGGGGGGTCTTGATGATAGTGGTGCAGCATCTGTGAGAGCAATAATGCACTGGCAGTATCGAACCATTTGTAGAGGGCAGAATTCTATATTACATAATCTTTATGAACTTCTTGGTTCAAAAATACATGACTACATCTCTTTTTTTGGCTTGAGGTCTTATGGTAGACTTTTTGAYGGTGGTCCTGTAGCAACCAGCCAGGTGTATGTTCACAGTAAAATCATGATTGTTGATGATCGCATAAGTTTGATTGGATCTGCTAATATTAATGATAGRAGCCTGCTTGGATCTAGAGATTCTGAGATTGGAGTAGTTATAGAAGACAGAGAGCTCATTGGTTCTTATATGGATGGAAAGCCTTGGAAAGCAGGAAAGTTCTCCTTGACTCTSCGTTTGTCATTATGGTCTGAGCACTTGGGTCTACCAGCAGGAGAGGTCAATCAAATAATGGACCCGATTATTGAATCATCTTACAAAGATATTTGGATGGCARCAGCAAAGACAAATACTGCAATTTACCAGGATGTCTTTTCTTGTGTACCTAATGATCTAATCCACACCAGACTTGCTTTCAGACAGAGTGTAGCCTTTTGGAAAGAAAGAATTGGTCACACAACCATTGATTTAGGAATAGCGCCGCAAAAATTAGAATCCTATCATGATGGAGATATCAAGARCACTGATCCATTGSAGAGATTAGCATCAGTGAGGGGTCATCTTGTTTCTTTTCCTTTGGAGTTCATGTGCCAAGAAAGTCTAAGACCTGGTTTCAGTGAAAGCGAATATTACGCCGCTGCTCAAGTTTTCCACTGA 3354 0.4273 MATEQLMSDGGAHRYFPMKPEQPPSPPAAAEEMSSVPSFRHGGAGEATRIFDELPKATIVSVSRPDASDISPMQLSYTIRFQYKQFKWELVKKASQVFYLHFALKKRAFFEEIHEKQEQVKEWLQNLGIGEHTTMVHDDDEADDETFASHADEYAKNRDVPSSAALPIIRPALGRQQSVSDRAKSAMQGYLNHFLGNISIVNSPEVCKFLEVSKLSFLPEYGPKLKEDYVMVKHLPKIPKDDDSRKCCTSSCFSCCNDNWQKVWAVLKPGFLALLADPFDKQPLDIIVFDVLPPSDGNGDGRLSLASEIKERNPLRHSFKVTCGIRSIRIRGKSSSKVKDWVAAINDAGLRPPEGWCYPHRYGSFAPPRGLIEDGSQAQWFVDGQAAFDAIASSIEDARSEIFICGWWVCPELYLRRPFDIHASSRLDNLLEAKAKQGVQIYILLYKEVALALKINSVYSKRKLLSIHENVRVLRYPDHFSSGVYLWSHHEKLVIVDNHICFIGGLDLCFGRYDSSEHKVGDCPPLIWPGKDFYNPRESEPNSWEDTMKDELDRRNYPRMPWHDVHCALWGPPCRDIARHFVQRWNYAKRNKAPYEEAIPLLMPQHHMVIPHYLGRSTEMEIENNNAENHRVIKREDSFSSLSQEQDVPLLLTRDESEGDPKMNGLNSFIHHVDKPIKVGGGLPFSFRRVKIEAVGQDTPMKGFVDDLGYMHYDEKKSLDRVPHVEQQSTGPEWWETQERGDQGDFADESGQVGPRVSCRCQVIRSVSQWSAGTSQTEESIHNAYCSLIEKAEXFIYIENQFFISGLSGDEMIRNRVLEALYRRIMLAYNENKSFRVIIVIPLLPGFQGGLDDSGAASVRAIMHWQYRTICRGQNSILHNLYELLGSKIHDYISFFGLRSYGRLFDGGPVATSQVYVHSKIMIVDDRISLIGSANINDRSLLGSRDSEIGVVIEDRELIGSYMDGKPWKAGKFSLTLRLSLWSEHLGLPAGEVNQIMDPIIESSYKDIWMAXAKTNTAIYQDVFSCVPNDLIHTRLAFRQSVAFWKERIGHTTIDLGIAPQKLESYHDGDIKXTDPLXRLASVRGHLVSFPLEFMCQESLRPGFSESEYYAAAQVFH* 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0288 1117 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 485 512 IPR001736 GO:0003824
Amo04g0288 1117 SMART pld_4 485 512 IPR001736 GO:0003824
Amo04g0288 1117 SMART pld_4 913 940 IPR001736 GO:0003824
Amo04g0288 1117 PIRSF PLD_euk 55 628 IPR016555 GO:0004630|GO:0006654|GO:0048017
Amo04g0288 1117 PIRSF PLD_euk 611 1117 IPR016555 GO:0004630|GO:0006654|GO:0048017
Amo04g0288 1117 Pfam PLD-like domain 915 960 IPR025202 -
Amo04g0288 1117 SUPERFAMILY PH domain-like 256 348 - -
Amo04g0288 1117 SUPERFAMILY Phospholipase D/nuclease 754 963 - -
Amo04g0288 1117 CDD PH_PLD 201 348 - -
Amo04g0288 1117 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 913 940 IPR001736 GO:0003824
Amo04g0288 1117 Gene3D - 251 350 IPR011993 -
Amo04g0288 1117 Gene3D Endonuclease Chain A 715 973 - -
Amo04g0288 1117 PANTHER PHOSPHOLIPASE D 43 1114 IPR015679 -
Amo04g0288 1117 SUPERFAMILY Phospholipase D/nuclease 341 605 - -
Amo04g0288 1117 SMART PH_update 224 352 IPR001849 -
Amo04g0288 1117 PANTHER PHOSPHOLIPASE 43 1114 - -
Amo04g0288 1117 CDD PLDc_vPLD1_2_yPLD_like_2 773 957 - -
Amo04g0288 1117 MobiDBLite consensus disorder prediction 1 39 - -
Amo04g0288 1117 CDD PLDc_vPLD1_2_yPLD_like_1 378 523 - -
Amo04g0288 1117 Pfam Phospholipase D Active site motif 485 512 IPR001736 GO:0003824
Amo04g0288 1117 Gene3D Endonuclease Chain A 371 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0288 Amo-Chr4 4866933 4878850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0288 1 997 Phospholipase D Gene Family (Wang group) AT3G16785 73.287 0.0 1402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0288 K01115 - gmx:100780514 1976.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1406 14 23860512 23867783 Amo04g0288 04 4866933 4878850 hybridization