Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0283 ATGGCGGCTTTTCGGAGAATGATTAGCTTCGGATCGAACAGAACTTTGACTCCACCCTCTCTTCTCACTTTCCGCAGAGGAATCGCTTTCAAGCTCTTCGTTGGAGGATTGTCTGTGCACACGACGGAGAAAGGATTGACAGATGCTTTCTCTGATTGCGGACAAGTAATTGAAGCTAAAATTATAACAGACAGGGTATCGGAGAGATCTAAAGGGTTTGGGTTCGTCACCTTTGCTTCACGGGTTGAGGCTGCGAATGCCATTTCACAGATGAATGGGAAGGCACTAAATGGCCGCGATATCTTTGTTGATTATGCGAAACCAACTTATTTCAAGAGTACTGGAATGCCCATTGCAAGAGGACCCCCTGAACTCCCCACAGTTGATAGTTGA 393 0.4631 MAAFRRMISFGSNRTLTPPSLLTFRRGIAFKLFVGGLSVHTTEKGLTDAFSDCGQVIEAKIITDRVSERSKGFGFVTFASRVEAANAISQMNGKALNGRDIFVDYAKPTYFKSTGMPIARGPPELPTVDS* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0283 130 SUPERFAMILY RNA-binding domain, RBD 30 117 IPR035979 GO:0003676
Amo04g0283 130 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Amo04g0283 130 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 101 IPR000504 GO:0003723
Amo04g0283 130 PANTHER TRANSFORMER-2-RELATED 1 125 - -
Amo04g0283 130 Gene3D - 23 113 IPR012677 -
Amo04g0283 130 SMART rrm1_1 31 104 IPR000504 GO:0003723
Amo04g0283 130 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL-LIKE 1 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0283 Amo-Chr4 4806868 4808639 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0283 29 107 Eukaryotic Initiation Factors Gene Family AT2G23350 32.911 1.43e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0283 - - pvu:PHAVU_001G192800g 170.629