Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0239 ATGTCTCTGAGGCCTAGTGAGAGGACGGAGGTTCGCCGGAACCGGTACAAGGTGGCGGTGGACGCCGATGAGGGTCGCCGGAGGAGGGAGGACAACATGGTGGAGATCCGAAAGAGTAAGCGCGAGGAGAGCCTCCTCAAGAAGCGCCGCGAGGGCCTCCAAGCTCAACAGCTCCTCCAGCAGCAGCAACAATTTCCAACCAATGTCCAAGCCTCATCCATCATGGAGAAAAAGTTGGAGAGTCTTCCTGCTATGGTCGCTGGGGTGTTGTCCAATGATAACAGCCAGCAACTGGAAGCTACCACACAATTTAGGAAGTTGCTCTCAATCGAGCGCAGCCCACCAATTGAGGAAGTTATCCAAGCTGGTGTTGTGCCACGGTTTGTTGAGTTTCTCCATAGGGACGATTTCCCCCAGCTTCAGTTTGAGGCTGCATGGGCTCTCACAAACATAGCGTCTGGAACTTCTGAGAACACTAAGGTGGTAATTGATCACGGGGCAGTCCCAATATTTGTGAAGTTACTTGGTTCTCCAAGTGATGATGTTCGAGAACAGGCTGTTTGGGCTTTGGGAAATGTCGCTGGTGACTCTCCTAGGTGCCGTGATCTTGTTCTCAGCCATGGTGCTTTGATCCCACTATTAGCCCAGCTGAATGAGCATGCTAAACTTTCAATGCTGAGAAATGCCACATGGACTCTGTCAAACTTCTGCAGGGGGAAGCCACAGCCTCCATTTGAACATGTGAAGCCAGCACTTCCAACTCTTGAGCGGTTGGTCTTTTCAAATGATGAAGAGGTTCTGACAGATGCATGCTGGGCACTTTCGTATCTTTCTGATGGAACAAATGACAAAATCCAAGCAGTTATTGAGGCAGGTGTATGTAGCAGGCTGGTGCAGCTTCTTTTGCACCCATCTCCTTCGGTGCTGATTCCTGCTCTTCGTACTGTGGGAAATATTGTGACAGGGGACGACATTCAAACTCAGGCTATTATCAATCATGGTGCACTCCCATGCCTTATGAGCCTGTTGACGCATAATCACAAAAAGAGCATCAAGAAAGAAGCTTGCTGGACTATTTCAAACATTACAGCTGGAAATAGAGATCAAATACAGGCTGTTATTGAAGCTGGTCTGATTGCTCCCCTTGTCAATCTTCTTCAAAATGCTGAGTTTGACATTAAAAAAGAAGCTGCATGGGCAATCTCTAATGCTACATCTGGTGGTAGTCATGAGCAGATCAAGTATTTGGTTAACCAAGGTTGCATTAAGCCTCTGTGTGATCTGCTTGTTTGTCCCGACCCAAGAATTGTCACCGTCTGTTTAGAAGGTCTGGAGAATATTCTAAAGGTCGGGGAATCTGAGAAGGCCATGGGTAACAGTGGAGATGTTAACTTGTATGCTCAGATGATTGATGATGCTGAAGGATTGGAGAAAATTGAAAACCTGCAGAGTCATGACAATAATGAAATATATGAGAAGGCCGTTAAAATTCTCGAAACATATTGGTTGGAGGATGAAGATGAGACACTACCTCCAGGCGATGTTGCTCAACCTGGTTTCAGTTTTGGTGGCAATGAGGTTCCAGTCCCATCTAGCGGATTCAACTTTAGTTGA 1614 0.4715 MSLRPSERTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLLKKRREGLQAQQLLQQQQQFPTNVQASSIMEKKLESLPAMVAGVLSNDNSQQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLHRDDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEHVKPALPTLERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLVQLLLHPSPSVLIPALRTVGNIVTGDDIQTQAIINHGALPCLMSLLTHNHKKSIKKEACWTISNITAGNRDQIQAVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKYLVNQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGESEKAMGNSGDVNLYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDEDETLPPGDVAQPGFSFGGNEVPVPSSGFNFS* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0239 537 Pfam Armadillo/beta-catenin-like repeat 251 278 IPR000225 GO:0005515
Amo04g0239 537 Pfam Armadillo/beta-catenin-like repeat 155 194 IPR000225 GO:0005515
Amo04g0239 537 Pfam Armadillo/beta-catenin-like repeat 197 238 IPR000225 GO:0005515
Amo04g0239 537 Pfam Armadillo/beta-catenin-like repeat 366 405 IPR000225 GO:0005515
Amo04g0239 537 Pfam Armadillo/beta-catenin-like repeat 410 447 IPR000225 GO:0005515
Amo04g0239 537 Pfam Armadillo/beta-catenin-like repeat 282 320 IPR000225 GO:0005515
Amo04g0239 537 Pfam Armadillo/beta-catenin-like repeat 113 153 IPR000225 GO:0005515
Amo04g0239 537 Pfam Armadillo/beta-catenin-like repeat 326 364 IPR000225 GO:0005515
Amo04g0239 537 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 123 166 IPR000225 GO:0005515
Amo04g0239 537 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 377 405 IPR000225 GO:0005515
Amo04g0239 537 PANTHER IMPORTIN SUBUNIT ALPHA 2 527 - -
Amo04g0239 537 PIRSF Importin_alpha 2 536 IPR024931 GO:0005737|GO:0006606|GO:0061608
Amo04g0239 537 Pfam Importin beta binding domain 12 102 IPR002652 GO:0006606|GO:0061608
Amo04g0239 537 Coils Coil 36 56 - -
Amo04g0239 537 Pfam Atypical Arm repeat 464 510 IPR032413 -
Amo04g0239 537 PANTHER IMPORTIN ALPHA 2 527 - -
Amo04g0239 537 Gene3D - 11 50 IPR036975 GO:0006606
Amo04g0239 537 SUPERFAMILY ARM repeat 12 508 IPR016024 -
Amo04g0239 537 Gene3D - 80 503 IPR011989 -
Amo04g0239 537 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Amo04g0239 537 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 166 208 IPR000225 GO:0005515
Amo04g0239 537 SMART arm_5 196 238 IPR000225 GO:0005515
Amo04g0239 537 SMART arm_5 155 195 IPR000225 GO:0005515
Amo04g0239 537 SMART arm_5 366 406 IPR000225 GO:0005515
Amo04g0239 537 SMART arm_5 409 449 IPR000225 GO:0005515
Amo04g0239 537 SMART arm_5 323 364 IPR000225 GO:0005515
Amo04g0239 537 SMART arm_5 240 279 IPR000225 GO:0005515
Amo04g0239 537 SMART arm_5 281 321 IPR000225 GO:0005515
Amo04g0239 537 SMART arm_5 112 153 IPR000225 GO:0005515
Amo04g0239 537 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 334 377 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0239 Amo-Chr4 3773771 3777954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0239 138 398 U-box Gene Family AT3G46510 25.191 2.95e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0239 K15042 - gmx:100780020 983.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1370 14 22752974 22757285 Amo04g0239 04 3773771 3777954 hybridization