Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0217 ATGTCAGAAGGAACCAGTCTGGTGCTGGAATCGTCCGAGAATTGCACAGATTTGTCTCAGGATGAGATTGGCACGATTGAGGAAACACCAGAGGAGACAATTTTATCAAGACAGACTTCTGTCAACCTTGTTCCTTTTATTGGTCAGAGATTTGTTTCTCAAGAAGCTGCTTATGAATTCTATTGCAGTTTTGCTAAGCAGTGTGGCTTTTCTATTCGGCGACACCGCACTCGAGGGAAGGACGGTGTTGGTCGCGGAGTCACAAGGAGGGATTTTACTTGCCATCGTGGTGGATACCCCCAGGTCAAACCTTCTGATGATGGGAAGATGCAAAGGAACCGCAAATCATCTCGTTGTGGTTGCCAAGCATACTTGCGTATTGTTAAAAAGTCGGATTTTGATGTCCCTGAGTGGCGTGTTACTGGCTTTAGCAATGTCCACAATCACGAGTTGTTAAAATCTAATGAGGTGCGGCTTCTTCCGGCATACTGCACAATATCTCCTGATGACAAGAGCCGCATATGCATGTTTGCTAAAGCAGGGATGTCAGTGAGGCAAATGTTAAGATTGATGGAACTAGAGAAAGGCATCAAAGTCGGTTGCCTTCCTTTTACGGAAATGGATGTGAGAAACCTGTTGCAGTCTTTCAGAAATGTTGAAAGAGACAATGATGCCATTGATCTAATTGCTATGTGCAAGAGATTAAAAGATGAAAATCCAAATTTCAAGTATGAATTCAAGATAGACAGTAATAACAGGCTGGAGCACATTGCATGGTCTTACAGCTCATCTGTTCAATCGTACGAGTCATTTGGAGATGCTTTGGTTTTTGACACCACACACCGAGTAGACGCCTATGACATGCTGTTGGGAATCTGGCTTGGAGTGGACAATCATGGGATGACTTGTTTCTTTGGTTGCACACTTCTACGGGATGAAAATATGCAGTCTTTTTCATGGGCTTTAAAGGTGGCAGATATTGTTGATTTTAACGACCGGGTTGGATTGAAGCAAAAAATGCAACGGAAAGCGCAGAAAGTGTGCCTCAAAACAGGCTCGCCTGTCGAATCTCATGCTGCCACTGTCCTTACACCTTATGCCTTAAGTAAACTCCAGGATGAGCTAGTTTTGGCGCCGCAGTATGCATCCTTTCTGGTGGATGAAGGTTGCTTCCAGGTCAGACATCACACTCAGACAGACGGAGGCTGCAAAGTATTTTGGGTTCCTTGTCAAGCGCACATTACCTGCAGCTGCCACCTGTTCGAGTTTTCAGGAACCTTATGCAGACATGTTCTACGTGTCATGTCGACCAATAACTGTTTTCACATCCCCGACCAATACCTACCCACCCGTTGGAGAGGTGGTGGTTTGTCTTCTGTCAACCAGTTTCGGGGCGTAACAACAAGGGATCAGCCTGAAAGGATGCAATTTTTGGAATCCATGGTTTCAACGCTTATAATGGAATCCATTGAAACAGAGGAACGCCTTGATGTTGCTTGCGAGCAAATGTCTGTGGCGCTGTCACGTATCAAAGCCCTTCCAAGGCCGCCGGCACATGGGGTGAATGACATCACATATAGTTATTCGTCGGATTCATTGATCCTACCAGAGGTAGAAGATACTGATGGAATAATTCATGGTTTTGCAAACCCCCACGATAGTATTGCCTTAGGAAAGCTAAAGGAGAGAAGGGCGAGGGATGTCGTTGATGTCACGAGGAAGCGTAGGCAGTTTCCGGGGCCGTTGTGTGGGCAATATGTGCATGATCCTTCCGATTGCTCAATAATGGCAGGTGATAATCTAGGTGGAGATGGATTAGGGTATTTGTAG 1830 0.4552 MSEGTSLVLESSENCTDLSQDEIGTIEETPEETILSRQTSVNLVPFIGQRFVSQEAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGYPQVKPSDDGKMQRNRKSSRCGCQAYLRIVKKSDFDVPEWRVTGFSNVHNHELLKSNEVRLLPAYCTISPDDKSRICMFAKAGMSVRQMLRLMELEKGIKVGCLPFTEMDVRNLLQSFRNVERDNDAIDLIAMCKRLKDENPNFKYEFKIDSNNRLEHIAWSYSSSVQSYESFGDALVFDTTHRVDAYDMLLGIWLGVDNHGMTCFFGCTLLRDENMQSFSWALKVADIVDFNDRVGLKQKMQRKAQKVCLKTGSPVESHAATVLTPYALSKLQDELVLAPQYASFLVDEGCFQVRHHTQTDGGCKVFWVPCQAHITCSCHLFEFSGTLCRHVLRVMSTNNCFHIPDQYLPTRWRGGGLSSVNQFRGVTTRDQPERMQFLESMVSTLIMESIETEERLDVACEQMSVALSRIKALPRPPAHGVNDITYSYSSDSLILPEVEDTDGIIHGFANPHDSIALGKLKERRARDVVDVTRKRRQFPGPLCGQYVHDPSDCSIMAGDNLGGDGLGYL* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0217 609 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 8 324 - -
Amo04g0217 609 Pfam SWIM zinc finger 413 436 IPR007527 GO:0008270
Amo04g0217 609 SMART 26again6 414 441 IPR006564 GO:0008270
Amo04g0217 609 Pfam FAR1 DNA-binding domain 59 152 IPR004330 -
Amo04g0217 609 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 328 589 - -
Amo04g0217 609 Pfam MULE transposase domain 275 325 IPR018289 -
Amo04g0217 609 ProSiteProfiles Zinc finger SWIM-type profile. 406 439 IPR007527 GO:0008270
Amo04g0217 609 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 328 589 IPR031052 GO:0006355
Amo04g0217 609 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 8 324 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0217 Amo-Chr4 3534243 3537198 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo04g0217 FAR1 1.3e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0217 - - pvy:116145541 629.787