Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0214 ATGGGGAGAACACCATGCTGTGAGAAAGTTGGGCTGAAGAAAGGAAGATGGACTGCTGAAGAGGATAAGATCTTGACCGATTATATCCAAGAGAATGGGGAAGGATCATGGAGGAACTTGCCCAAGAATGCAGGTTTGTTAAGGTGTGGAAAGAGTTGCAGGCTGAGGTGGATAAACTATTTGAGAGCAGATGTGAAGAGAGGGAACATCACTCCTCAAGAAGAAGAGATCATTGTCAAGTTGCATGCTGTTCTTGGTAATAGGTGGTCAGTGATAGCAGGACATTTACCAGGAAGAACAGACAATGAGATAAAGAATTATTGGAACTCTCATCTGAGAAGAAAGATTTACTGTTTCATGAGATCACTCAATGAGTCTCTTCCTCCAATTGACATGGCTGCTCTTAATGAAGCTGCATCCAAGAGAAGAGCAGCACCTAGAAGATCATCAACAATTCAAGAAAACAACAACAATAATAATAAGACTTCATTGCCTAAAAGAGAAGCAATCACAACAAGTTCCCAAAATTGTTGCAACATTTTAGGAGATCATCATGATCATGATGATGATGATGGCAAGGGAATTTCAATGATGGATGCTTACTTCCAAATGGAGTTGGGGAACAACAATAATCCTGCTAGTAGCTTCATGAATAATAATAATAATAATGGAGATTTTGATGAGGGTTTATTGGGAGCATATGAATGGCCAGATGAAGAAATTATGAGACTTACTCAAATGTTTGAAAATGGGGTGCTTGTCAATAATAATAATAATAATAACAATATAGCCCTTAAAGAGGAGCCTAATGGAAATTATTATTATGATGATGATGAGTGTGGCCAAATGATGGATATGGATATGGATTTGGATATGGATGCAATTGGAGCAACAAGAACAACAAGTGAAGAAGAAGAAGAAGAGAGCAAGAATCATAAGAATAATAATAATATTGCTGCCTCCATTAGTGAACATAATTATTGGTACAACAACAATAACAATGATAATAGTTGTTCATCATCCTCAGTTGGTGACTATCATCAGTGGCATGATTGGGATTTGGCTCATCAATCCAATAATAATAATCATCATCATCAATGGGATCTTTCTACTGAAGATGATCAAATGCTGATGATGAATTCCTTGTGGGGTACCACCACCAAT 1164 0.3737 MGRTPCCEKVGLKKGRWTAEEDKILTDYIQENGEGSWRNLPKNAGLLRCGKSCRLRWINYLRADVKRGNITPQEEEIIVKLHAVLGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFMRSLNESLPPIDMAALNEAASKRRAAPRRSSTIQENNNNNNKTSLPKREAITTSSQNCCNILGDHHDHDDDDGKGISMMDAYFQMELGNNNNPASSFMNNNNNNGDFDEGLLGAYEWPDEEIMRLTQMFENGVLVNNNNNNNNIALKEEPNGNYYYDDDECGQMMDMDMDLDMDAIGATRTTSEEEEEESKNHKNNNNIAASISEHNYWYNNNNNDNSCSSSSVGDYHQWHDWDLAHQSNNNNHHHQWDLSTEDDQMLMMNSLWGTTTN 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0214 388 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Amo04g0214 388 CDD SANT 16 61 IPR001005 -
Amo04g0214 388 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Amo04g0214 388 Gene3D - 13 66 - -
Amo04g0214 388 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Amo04g0214 388 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo04g0214 388 CDD SANT 71 112 IPR001005 -
Amo04g0214 388 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 284 - -
Amo04g0214 388 SMART sant 66 114 IPR001005 -
Amo04g0214 388 SMART sant 13 63 IPR001005 -
Amo04g0214 388 MobiDBLite consensus disorder prediction 149 167 - -
Amo04g0214 388 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo04g0214 388 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Amo04g0214 388 MobiDBLite consensus disorder prediction 138 167 - -
Amo04g0214 388 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo04g0214 388 Gene3D - 71 116 - -
Amo04g0214 388 PANTHER MYB TRANSCRIPTION FACTOR 2 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0214 Amo-Chr4 3479758 3483552 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0214 1 244 MYB Transcription Factor Family AT5G49330 51.020 3.04e-75 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo04g0214 Myb_DNA-binding 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0214 K09422 - gmx:100819041 360.918