Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0203 ATGAGTTCTTCAGTGACAGGAGCTGCTGGATCTGGTGATGATGGAAGAAGTAGTAACAACAAAGGAAAAAGACCTGCCTACAAACGCCTTACTTCTGCTCAAACAGCTAAACTTGAAAAGTACATTATTGATTGTCCTCATCCTGATGAAGCTCAACGAAGGCAACTTGCTGAGGAGAATCAACATGAGCGAGCAGATAACAATGCTCTTCGGGCTGAGAATGAAAGGATACAAAACGAGAATCTCCTAATGAAAGAGGCACTTAATAATATACTTTGCCCTTCTTGTGGGGGCCCACCTGCCGCTGGTGAAGACCATGAACACTTCATGCAGAAAATGCTTCTTGAAAATGCCCACCTTAAGGAAGAGGCAAGCCTAAACTCCTTCAACACATCCTCTTTTCAACATGTTTCGCATGGGAAAATATCAAACATTCTTTCAAGGTACTTGGAGAAAGAGGTGCTACACCCTGAAGATATAGAGCAGCTAAACGCAATTCCGAACAACATAGACATTGCGGGGTCATCATCAACAACACCACTGTATGATTTCTCAGTTGCAAATGGAACCTTGTTGAACCAACAACAAGGGGTTAGCATCAATGATGTTGTTGCAGGCCCTTCTTCTTCACTACTTCATCATCAGAACTATGTTCCACCACCAATTGTTGCTGATAACAATGATAATGGGGAACAAGGTGTGGCAGTAATGGAGGTTGCATTGGCCTCCGAGGTTGCGGCTACCGCCCTGGATGAACTGCTTAGGCTTATTCGCCTCAATGAACCGTTCTGGGTTGGTTCTGCTTTTGATGGGAAGCTTGTGCTTCACGGTGAAAGCTACGAAAAGATGTTCCCTAGGGTTTATCAATTCAACGATGGAAACTCTCGTGTTGAATCATCAAAGGAATCAGGGATTGTCAACATAAGTGGGATTCAACTGGTTGATTTGTTTCTTGATTCGGAAAAATGGGCGAATGCTTTTCCAACAATAGTTACAAAAGCGCAGACACTTGAAGTGTTTGAAATTGGATTGCCAGAAAGTCGAAGCGGAGCCTTACAATTGATGTATGAAGAGATGCACGGGTTTTCACCATTGGTGGCATCTCGTGAATTCCAATTCCTCCGGCACTGCCATCAACTGGAGCCTGGATCGTGGATCATAACAGATGTGTCTTTCGATTCGCTTCGAAACTACCCCTTTCGCCTTCCTCGCTCTCGCTCTTGGAGACGTCCCTCTGGATGCTTGATCCAGGAACTCCCCAACTCCACTTCTTGCATGGTTACTTGGATCGAACACGTGGAAGTGGATGATAAGATTCAGACTCACCGGCTTTACAGAGATCTTGTTAGCACCAATGCTGCATATGGAGCACAGAGATGGATTATGGAACTTCAAAGAATGTGCCTCAGATCTATGAGCTATGCTCTTGAAAACATACCTGATCATGAATATGGTGGAGTGATAAATACAAATGAAGGAAGGAGGAGTGTGATGAGGCTAGGTCAGAGGCTGGTGAGGCTATTTAGTGAGAATTTGAACATGAGTGGAAAGGTGGAGTTTCCGCAGTTGAGTGTGGAGTACAACAGTGGGGTGAGGATCTCAGCTCGAAGATGCACAGAGAAAGGGCAGCCAAATGGGACCATTGTGATTGCTGCAACGTCTCTTTGGCTGCCTCTCCATTACCACACAGTGTTTGAATTCTTGACTGATATCAACAAACGCTCTCAGTGGGATGTTCTTTTCTGCACAACTCCAGTCCACTACATTGCACACATCTCAAATGGAACTCATCCTGCCAACAATACATCAATTATCCAGCCATTCATGTCAAGCGAGAACAATGCCGTTATAATTCAAGAAAGCTTCATAGACCCAGTGGGATCATCTTACATAGTGTATGCTCCAGCTGACGTGGAAGCCATCCACGTCGCCATTAGCGGCGAGGACTCTTCCACCATCCCTATCCTTCCCTCAGGATTTGTTGTGTGTGGAGATGGCAGAGCATCAATGATGAGCAACAGCACCATTATTGCACCATCGGTTCTTGGTGGAGTTGGAAGCTATGGCTATCAGCATAGATCAGAAGGAGGGTCACTGTTGACGGTGGCATTCCAAATTCTGGTTAATACCATCACTTGTGGACCCAACCTAGTGAATATGGAATCTGTGGATTCTATTAACACCCTTTTGACTTCAACCGTCCAGAAGATCAAGGACGCTTTGAACTGCAATGCCTTGCACTGA 2244 0.4514 MSSSVTGAAGSGDDGRSSNNKGKRPAYKRLTSAQTAKLEKYIIDCPHPDEAQRRQLAEENQHERADNNALRAENERIQNENLLMKEALNNILCPSCGGPPAAGEDHEHFMQKMLLENAHLKEEASLNSFNTSSFQHVSHGKISNILSRYLEKEVLHPEDIEQLNAIPNNIDIAGSSSTTPLYDFSVANGTLLNQQQGVSINDVVAGPSSSLLHHQNYVPPPIVADNNDNGEQGVAVMEVALASEVAATALDELLRLIRLNEPFWVGSAFDGKLVLHGESYEKMFPRVYQFNDGNSRVESSKESGIVNISGIQLVDLFLDSEKWANAFPTIVTKAQTLEVFEIGLPESRSGALQLMYEEMHGFSPLVASREFQFLRHCHQLEPGSWIITDVSFDSLRNYPFRLPRSRSWRRPSGCLIQELPNSTSCMVTWIEHVEVDDKIQTHRLYRDLVSTNAAYGAQRWIMELQRMCLRSMSYALENIPDHEYGGVINTNEGRRSVMRLGQRLVRLFSENLNMSGKVEFPQLSVEYNSGVRISARRCTEKGQPNGTIVIAATSLWLPLHYHTVFEFLTDINKRSQWDVLFCTTPVHYIAHISNGTHPANNTSIIQPFMSSENNAVIIQESFIDPVGSSYIVYAPADVEAIHVAISGEDSSTIPILPSGFVVCGDGRASMMSNSTIIAPSVLGGVGSYGYQHRSEGGSLLTVAFQILVNTITCGPNLVNMESVDSINTLLTSTVQKIKDALNCNALH* 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0203 747 SMART START_1 244 470 IPR002913 GO:0008289
Amo04g0203 747 ProSiteProfiles START domain profile. 235 473 IPR002913 GO:0008289
Amo04g0203 747 MobiDBLite consensus disorder prediction 1 16 - -
Amo04g0203 747 Pfam START domain 244 469 IPR002913 GO:0008289
Amo04g0203 747 SUPERFAMILY Bet v1-like 528 738 - -
Amo04g0203 747 SUPERFAMILY Bet v1-like 242 469 - -
Amo04g0203 747 MobiDBLite consensus disorder prediction 1 31 - -
Amo04g0203 747 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 19 743 - -
Amo04g0203 747 Gene3D - 278 458 IPR023393 -
Amo04g0203 747 CDD homeodomain 21 59 IPR001356 GO:0003677
Amo04g0203 747 Coils Coil 53 90 - -
Amo04g0203 747 CDD START_ArGLABRA2_like 240 468 - -
Amo04g0203 747 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 19 743 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0203 Amo-Chr4 3195380 3200513 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0203 23 742 Homeobox Transcription Factor Family AT1G73360 38.503 6.17e-161 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0203 K09338 - gmx:100795075 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1136 14 17731313 17736446 Amo04g0203 04 3195380 3200513 hybridization