Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0190 ATGAAGAAAGTCATAGCAGCCAGAAGCCGAAAGCGTAAACAAGATCGCTCTTGCGCAAAAGAAGAACAAGTTCCTGATGATGACGAACCTGTATCAGTCAAAGCCTCAGGTAAGAAAGGTTCTTCTGCACAAGATAAGTCCTTCAGTTTTTTCCTTTCAGACCCAGACGTCCTTGATTGCCCCATTTGCTTTAATCCTCTCACCACTCCAGTCTATCAGTGTGAAAACGGTCATGTTGCTTGCTCTGCTTGCTGCTCGCGCATTCTTGAGAAAAAGTGTGCCTCCTGCTTCTTGTCAATAGGTTCCATTCGTAGCAGAGCCTTGGAGAAAGTTCTGGAATCTATTAAAGTTGCATGCGCTAATGCCGAATACGGTTGCACGGAAACACTTCGTTACAGTGACAAATCTGGCCATGAGTCCCAATGCAACTTTGTCCCATGCTCTTGTCCACACTCAGATTGTAACTTCGTTTCATCATTCTCGGATCTACCCGCCCACTATAGAACTGAGCATGGTTCCTCTGCTAGCGCCGGAGTGAGGTTTTCGTACGGTAAGCCCTTCAAGGTCACACTGGATTCTGATGATGACGTCACTATACTTCAAGAAGTGAATGGTGAAAAGTTGTTCATAGTCCAGAATTTTGTGGCGGGTCTTGGAAATGCTGTCAGTGTTTTCTGCATTCAGCCAGAGTTATTGCCTAACTATCGGTGCCAAATTTCAGCCAAGTCAAATGGATGCAGTCTGGAGATGAATTCTTTTACCAAAAACATTCAAAACTCTGCTATGGCCAGATTGGCAACTATTCTTTCATCAAGGTTTCTGGTCATTCCAACTGATTATTTTGGTGCCGTTTGGATTGAGACAATTTGGACTTATCATGAAGAGTTTTTGGAATGTTATTATGTTAAGATTTTGGTCCGCGAGATTGCCAATGAAAACAGATTAATTTGCCGCACCCCTCGTCATGATACATCTAGGCCTTTGCAATGTCGTGCTTTCCAGGCTGATGTTGTTTCTGGAGATTCCAAGGCTAAACCAAAAAGTGTCCAATACTTATTGATGGGTCAACCTCCTAACCACCCTTTTCCCATGCCACCACAGAATACAAAGCATACTGCCTTGACAGAAAGAAAGATCATAGAAATGAAGAAAGTCATAGCAGCCAGAAGCCGAAAACGTAAACAAGATCGCTCTCGCGCACAAGAAGAAGAAGTTTCTGATGATGAACATGTAACAGTCAAAGCCTCAGGTAAGAAAGGTTCTTATGCACAAGATAAGTCATTCAGTTTCTTCCTTTCAGACCCAGACGTCCTTGATTGCCCCATTTGCTTTAATCCTTTCACCACTCCAGTCTATCAGTGTGAAAATGGTCATGTTGCTTGCTCTGTTTGCTGCTCGCGCATTCTTGAGAAAAAGTGTGCCTCGTGCTCCTTGCCAATAGGTTCCATTCGTAGCAGAGCCTTGGAGAAAGTTCTGGAATCTATTCAAGTTCCATGCACTAATGCCGAATACGGTTGCACGGAAACACTGCGTTACAGTGACAAGTCTGGCCATGAATCCCAATGCAACTTTGTCCCATGCTCTTGTCCACACTCAGATTGTGACTTCGTTTCATCATTCTCGGATCTACCCGCCCACTATAGAACTGAGCATGGTTCCTCTGCCAGCGCCGGAGTGAGGTTTTTGTACGATAAGCCTTTCAAGGTCACACTGGATTCTGATGATGACGTCACTATACTTCAAGAAGTGAATGGTGGAAAGTTGTTCATAGTCCAGAATTTTGTGGCGGGTCTTGGAAATGCTGTCAGTGTTTTCTGCATTCAGCCAGAGTTATTGCCTAACTATCGGTGCCAAATTTCGGCCAAGTCAAATGGATGCAGTCTAGTGATGAATTCTTTTACAAAAAACACTCAAAACTCTGCTATGGCTACTATTCTTTCATCAAGGTTTCTGGTCATTCCAACTGATTATTTTGGTACCGGTCAACCTCGCAATTTAGAAATTAGCATATTTAGGTCATATGAATAG 2028 0.4349 MKKVIAARSRKRKQDRSCAKEEQVPDDDEPVSVKASGKKGSSAQDKSFSFFLSDPDVLDCPICFNPLTTPVYQCENGHVACSACCSRILEKKCASCFLSIGSIRSRALEKVLESIKVACANAEYGCTETLRYSDKSGHESQCNFVPCSCPHSDCNFVSSFSDLPAHYRTEHGSSASAGVRFSYGKPFKVTLDSDDDVTILQEVNGEKLFIVQNFVAGLGNAVSVFCIQPELLPNYRCQISAKSNGCSLEMNSFTKNIQNSAMARLATILSSRFLVIPTDYFGAVWIETIWTYHEEFLECYYVKILVREIANENRLICRTPRHDTSRPLQCRAFQADVVSGDSKAKPKSVQYLLMGQPPNHPFPMPPQNTKHTALTERKIIEMKKVIAARSRKRKQDRSRAQEEEVSDDEHVTVKASGKKGSYAQDKSFSFFLSDPDVLDCPICFNPFTTPVYQCENGHVACSVCCSRILEKKCASCSLPIGSIRSRALEKVLESIQVPCTNAEYGCTETLRYSDKSGHESQCNFVPCSCPHSDCDFVSSFSDLPAHYRTEHGSSASAGVRFLYDKPFKVTLDSDDDVTILQEVNGGKLFIVQNFVAGLGNAVSVFCIQPELLPNYRCQISAKSNGCSLVMNSFTKNTQNSAMATILSSRFLVIPTDYFGTGQPRNLEISIFRSYE* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0190 675 MobiDBLite consensus disorder prediction 11 34 - -
Amo04g0190 675 SUPERFAMILY TRAF domain-like 494 659 - -
Amo04g0190 675 SUPERFAMILY TRAF domain-like 114 282 - -
Amo04g0190 675 Pfam Seven in absentia protein family 483 655 IPR018121 GO:0005737|GO:0006511|GO:0007275
Amo04g0190 675 Pfam Seven in absentia protein family 103 215 IPR018121 GO:0005737|GO:0006511|GO:0007275
Amo04g0190 675 MobiDBLite consensus disorder prediction 388 411 - -
Amo04g0190 675 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 17 291 - -
Amo04g0190 675 MobiDBLite consensus disorder prediction 1 45 - -
Amo04g0190 675 CDD RING-HC_SIAHs 58 96 - -
Amo04g0190 675 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 17 291 IPR044286 -
Amo04g0190 675 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 383 671 IPR044286 -
Amo04g0190 675 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 386 495 IPR013083 -
Amo04g0190 675 ProSiteProfiles Zinc finger SIAH-type profile. 114 172 IPR013010 GO:0008270
Amo04g0190 675 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 383 671 - -
Amo04g0190 675 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 112 IPR013083 -
Amo04g0190 675 MobiDBLite consensus disorder prediction 395 411 - -
Amo04g0190 675 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 166 IPR013083 -
Amo04g0190 675 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 496 546 IPR013083 -
Amo04g0190 675 ProSiteProfiles Zinc finger SIAH-type profile. 494 552 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0190 Amo-Chr4 3088419 3094551 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0190 436 561 C3H Transcription Factor Family AT2G41980 37.500 7.33e-22 95.1