Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0189 ATGGAGAAAGCACAAGCCTCTAATGCAAAAAATAACAACAAACCTGTGACAGTCAAAGCAGCAGGTAAGAAAGCTTCTTCTGTTGAAGATAGGTCTTCCAGTATCTTCCTTTTAGACCCAGACGTCCTTAATTGCCCAATTTGCTTTGATCGCCTCACCATTCCAGTCTATCAGTGTAAAAATGGCCATGTTGCTTGCTCTGTTTGCTGCGGTCGCATTCTTAACAAGTGTGGCTTATGCTCCTCCATCCTGACTGGTACGCAACGTTGCAGAGCCTTGGAGAAAGTATTGGAATCCGTTAAAGTTCCATGCCCTAATGCCAAATACGGTTGCAAAGACACATTATTGTGTTACAGTGACAAGTCTGGCCATGAATCCAAATGCGAATTTGTGCCATGTTCTTGCCACACACAGATTGCGACTTTGTTTCCTCGTTCTTGGATCTATCCGCCCACTTCACAACTGAACATGGTTTCTCCGCCGGTGCCGGAGTGA 495 0.4525 MEKAQASNAKNNNKPVTVKAAGKKASSVEDRSSSIFLLDPDVLNCPICFDRLTIPVYQCKNGHVACSVCCGRILNKCGLCSSILTGTQRCRALEKVLESVKVPCPNAKYGCKDTLLCYSDKSGHESKCEFVPCSCHTQIATLFPRSWIYPPTSQLNMVSPPVPE* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0189 164 Pfam Seven in absentia protein family 89 137 IPR018121 GO:0005737|GO:0006511|GO:0007275
Amo04g0189 164 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 11-RELATED 6 136 - -
Amo04g0189 164 MobiDBLite consensus disorder prediction 1 15 - -
Amo04g0189 164 SUPERFAMILY TRAF domain-like 99 136 - -
Amo04g0189 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 146 IPR013083 -
Amo04g0189 164 MobiDBLite consensus disorder prediction 1 22 - -
Amo04g0189 164 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 6 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0189 Amo-Chr4 3086438 3087017 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0189 41 135 C3H Transcription Factor Family AT2G41980 45.263 4.34e-18 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0189 K04506 - gmx:100797881 147.517