Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0184 ATGATAAAAGACAAGAAGATAGAAAGCCAAGAGAGTAGTTCTCTGCTACTCCTGATGGGTGCTCCTAAGCAGAAATGGACATCTGAAGAGGAAGCAGCTCTTAAAGCTGGAGTTGTCAAGCATGGGGTTGGTAAATGGCGTACAATACTCAAGGATCCAGAATTTAGTGGTGTTTTGTATCTGCGGTCCAATGTGGATCTCAAGGATAAATGGAGAAATCTGAGTGTGATGGCAAATGGATGGAGTTCTAGGGAAAAGTCTAGGTTGGCTATCAGAAGGGTGCATCAAGCCCCAAAACATGATGAGAACCCTTTTGCTGTCGCTCCTTTTACTCCAAGTGATGAAGATATTGTTGATGTTAAGCCTATTCAAGCTTCCAGAGATGTGGTGCCATTTTCTGGTCCAAAAAGGTCTATTGTAAGATTGGATAACCTTATAATGGAGGCAATAACTACCTTGAAGGAAACTGGTGGTTCTAATAAGACAACTATTGCAGCTTTCATAGAGGACCAATATTGGGCACCACCTGACTTCAAAAGGTTGTTGTCAGCAAAGTTAAAGTATTTGACAGCATGTGGAAAGCTGATCAAGGTAAAACGCAGATATAGGATTGCACCTACGCCAGCATATTCTGACAGAAGAAGAAGTTCAAGCTTGTTAATGGATGGGAGGCAGAAAGCCTCTTTGAGAGGTGACAAGGAAGAGACCAATGTCCTTACGAAGTCTCAGGTAGATTTAGAATTAGCAAAGATAAGGTCGATGTCTGCACAAGAGGCAGCTGCAGTTGCTGCTCGAGCAGTTGCAGAAGCAGAAGCTGCCATAGCAGAAGCTGAAGAGGCAGCAAGAGAGGCAGAGGCAGCAGAAGCTGATGCAGAAGCGGCACAAGCTTTTGCAGATGCTGCTATGAAAACACTGAAGGGTCGAAACACCCCAAAGATGATGATCCATGCTTAA 954 0.4392 MIKDKKIESQESSSLLLLMGAPKQKWTSEEEAALKAGVVKHGVGKWRTILKDPEFSGVLYLRSNVDLKDKWRNLSVMANGWSSREKSRLAIRRVHQAPKHDENPFAVAPFTPSDEDIVDVKPIQASRDVVPFSGPKRSIVRLDNLIMEAITTLKETGGSNKTTIAAFIEDQYWAPPDFKRLLSAKLKYLTACGKLIKVKRRYRIAPTPAYSDRRRSSSLLMDGRQKASLRGDKEETNVLTKSQVDLELAKIRSMSAQEAAAVAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQAFADAAMKTLKGRNTPKMMIHA* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0184 317 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 138 206 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo04g0184 317 Gene3D - 136 214 IPR036388 -
Amo04g0184 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 51 IPR017930 -
Amo04g0184 317 SUPERFAMILY Homeodomain-like 20 89 IPR009057 -
Amo04g0184 317 PANTHER SINGLE MYB HISTONE 4 19 314 IPR044597 GO:0003691
Amo04g0184 317 Pfam linker histone H1 and H5 family 143 199 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo04g0184 317 CDD SANT_TRF 24 74 - -
Amo04g0184 317 Pfam Myb-like DNA-binding domain 23 74 IPR001005 -
Amo04g0184 317 SUPERFAMILY "Winged helix" DNA-binding domain 136 215 IPR036390 -
Amo04g0184 317 MobiDBLite consensus disorder prediction 214 234 - -
Amo04g0184 317 SMART sant 22 77 IPR001005 -
Amo04g0184 317 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 19 314 - -
Amo04g0184 317 Gene3D - 20 77 - -
Amo04g0184 317 Coils Coil 260 297 - -
Amo04g0184 317 ProSiteProfiles Myb-like domain profile. 23 75 IPR001005 -
Amo04g0184 317 SMART h15plus2 136 201 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0184 Amo-Chr4 3000524 3004615 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0184 19 317 Single Myb Histone (SMH) Gene Family AT1G49950 66.118 1.87e-107 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo04g0184 Linker_histone 8.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0184 K09422 - gmx:100780698 381.719