Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0144 ATGCGGTTGCTCCTTTCGTCGTCACACGAGCTCTCTCGATCGTGCTCTTGTCTCACAAGCTCCCTCCACCGCCGCTCTTGCGCTGCTTCTTCTCTCCTCGCCGGAATAGGCCTCCGCCTCCTTCTCATCCCTAGCCCTAACCCTTCCATTGTGATTCTGGGAGATGACAGTAACACAACTCCAAAGACAACAACGCGTTTAATTGATTCTGATCTTGCCGTTGCTCTTTTACTCTCTTTCTCACTCTCTTATCTCCACTCACTCACTCTCTTATTTATCAAATATACCTTATCTCTCACTCACTCACTCTCCTATTTATCAAATAATAGGGCTGGGAATGGGAAACTTGTAGTTGTGGACTCCAATGATCAAACTAAGCTTAAACATGAGGATCAGAAGACTCTTCGTAGACTGGCTCAGAATTGTGAGGCTGCTAAGAAGAGTCGATTGAGGAAGAAGGCATATGTGCAGCAAATGGAGAATAGTAGAGTTAGGCTTGCACAATTAGAGCAAGAACTTCAGTCATCCAATTTCAAGAACCCTTCCCCATTTGGGCACATTTTGCTTGATCAGAGTTTTAGCCCCAGCTGTATAATGCATCCAGATACTTACCTAAATAAGGTTCTCGTTGGGAGCGAGCAAGGTCCTATGCAGCTTTGGAACATTAGCACAAAGAAAAATATATTTGAGTTTAAGGGATGGGATTCACCGATCACCTGTTGTGTTTCCTCCCCTGCTCTAGATGTCGTTGCAGTTGGGTGTGCAGATGGAAGCATTCATGTTCATAACATTCGTTATGATAAAGAATTGGTTACATTTACACATTCTACACGAGGTTTTGTCACTGCCTTATCTTTCTGCACTGATGGAAAACCCCTTCTAGCCTCTGGAGGTTCATCAGGTGTCATAAGCGTATGGAATCTGGAAAAGAAAAGGCTTCAGTCAGTTGTAAGAGAGGCTCATGATAGTGTGATCACATCACTACATTTTTTTGCAAATGAGCCAGTGCTTATGAGTTCTTCAGCAGATAATTCTATTAAGAATAATCTTCATGAACTCTGGACCCTTCTCAATTTTCTTCTGCCTGAAATTTTTAGCTCTGCTGAAACTTTTGATGAATGGTTCCAAATATCAGGTAAAATGGTTCTATTGGATAAGTTACTTCCTAAATTAAAAGAGCGTGATTCCGGGGTCCTGATATTTTTACAGCAAGACCATGGAGTAAGTGAGCAAGAACCAGGCATTAGTAGATGCTATTGGAGAACCAATAGTTAA 1275 0.4227 MRLLLSSSHELSRSCSCLTSSLHRRSCAASSLLAGIGLRLLLIPSPNPSIVILGDDSNTTPKTTTRLIDSDLAVALLLSFSLSYLHSLTLLFIKYTLSLTHSLSYLSNNRAGNGKLVVVDSNDQTKLKHEDQKTLRRLAQNCEAAKKSRLRKKAYVQQMENSRVRLAQLEQELQSSNFKNPSPFGHILLDQSFSPSCIMHPDTYLNKVLVGSEQGPMQLWNISTKKNIFEFKGWDSPITCCVSSPALDVVAVGCADGSIHVHNIRYDKELVTFTHSTRGFVTALSFCTDGKPLLASGGSSGVISVWNLEKKRLQSVVREAHDSVITSLHFFANEPVLMSSSADNSIKNNLHELWTLLNFLLPEIFSSAETFDEWFQISGKMVLLDKLLPKLKERDSGVLIFLQQDHGVSEQEPGISRCYWRTNS* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0144 424 Gene3D - 78 348 IPR015943 GO:0005515
Amo04g0144 424 SMART WD40_4 267 307 IPR001680 GO:0005515
Amo04g0144 424 SMART WD40_4 310 350 IPR001680 GO:0005515
Amo04g0144 424 SMART WD40_4 224 263 IPR001680 GO:0005515
Amo04g0144 424 PANTHER WD REPEAT-CONTAINING PROTEIN 36 179 347 - -
Amo04g0144 424 Coils Coil 152 179 - -
Amo04g0144 424 Pfam Basic region leucine zipper 130 174 IPR004827 GO:0003700|GO:0006355
Amo04g0144 424 Gene3D - 349 386 IPR038718 -
Amo04g0144 424 SUPERFAMILY WD40 repeat-like 186 347 IPR036322 GO:0005515
Amo04g0144 424 Pfam Anaphase-promoting complex subunit 4 WD40 domain 244 331 IPR024977 -
Amo04g0144 424 SMART brlzneu 129 193 IPR004827 GO:0003700|GO:0006355
Amo04g0144 424 Pfam SNF2-related domain 346 378 IPR000330 GO:0005524|GO:0140658
Amo04g0144 424 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 136 151 IPR004827 GO:0003700|GO:0006355
Amo04g0144 424 SUPERFAMILY Leucine zipper domain 134 177 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0144 Amo-Chr4 2443551 2447826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0144 109 176 bZIP Transcription Factor Family AT1G68640 63.235 7.61e-20 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo04g0144 ANAPC4_WD40 9.3e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0144 K14554 - adu:107469594 486.493