Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0118 ATGTTGCATTTCAAGAAGGGCGAGGCAGTGGAGGCCACCCACCCTAAAAACCCAGAGAACCGTAACCGTCTCTACCCTGCTTCCGTTCTCCGCGCCACCAACAATAACCGCCTCCTCCTCCAGTACCACACTCTCTTCTCCGACCACCCTCCCAACAACCCCCTCCGCTATTCACTCCCCCTCTCTTGCGTCAGGCCCAAGCTTCCCGACCTCCTCAACCCCTGGTTCAAGGTTGGCGATCCCGTCGACGCATACTGCCACTCTCACGGCGGCGCTGCCTGGTGCTCCGCTACTGTCGACGATATCCTCGAGAACTCCAGGTATGCGGTGTCGTTTTGGGATGAGAAGGGGAATGTAAGCACGGAGCGTGCGGTTATTGAACAATGCAGGATGCGCCCTCACCGTGAATGGGTCCATGGATACTGGGTCCCACCTCTTCCGTCTCAAATGGATAACAATATCCAATATACATCAAGCAAGCCAAAGAAACTCAAAGCTGACGAAACCTATAAGGAGCAGCCACCTGAGATGGTGTCGATGACGAATACAGGAAATTTAAGATTTAAGATCAAATATAGCAGGAGACAATTAAAAGAGTCAAAGTTTAAAAAAGGCAGAATGGTGGAAGTCAGGGATGAGGATGAAGGTTACGAAGGTGCTTGGTTCGTTGCTACTATTGTTAGCTCAGTAGGAAAAGACATGTTTCTTGTAGAATATAGGGACCTCTTAGCAGATGATGGAACTCATCAGCTCTTGCAAGAAGTCGTCTATGAAAAATTCATAAGGCCCTGTCCACCTGAAGTTCCCTCTGTTAGCTCTTTCAAACAGTTTCAAGAGGTTGATGCATGGTATAATGATGCTTGGTGGGAAGGCGTGGTTCTTGCAGTGGTAAATAGCAGCGAGTATTTTGTTTCTTTCATGCACAACGATGTTTTGAGATTTGAAAGTTCCAAGCTAAGACCACACCAAGACTGGTTTGATGGAAAATGGGTCATGGCATCTAAGGGGTCAAGGGAACTGACAAAGAAGTTTGGAGATGTGATGTCAAAAGCCAAGAATCTCACTGGTAATAAAATAATATTGAAATGTCTGAAATCTCTCGAGCCAGAGCTGGAACAGATGCCAAGAATTCTAATGTCAGGGTCCAGGAACAGCAGCATTCAATTTGCATCGCATTTATATAAAGGTGCAAAGGTAGAAGTCAGGAGTGATGAAGAAGGTTACCAAGGTGCCTGGTACACTGCCATCATTGTTAACTCTTTACAGAACGGCAAGTATGTGGTGGAGTATCTCACCCTGAAAACTAACGACTTAACCGAACAACTGAGAGAGGAAGCAGATGCTTCAGATATCAGGCCAGTTCCACCAGACATTCAACATCGCCATCGCTATGTGCTGCGTGAATGGGTTGACGCTTGGTACAACGACGGATGGTGGAAAGGCCAGGTATGCGGTTTCGCTTGCTTCAGGTATAGTGTTTACTTTTGGCCTACAAAGGAGCAGCTGGAATTTGAACATTGTCATCTAAGGCCTCACCAAGAATGGATTGATGGAAGATGGGTACATGCTTGA 1572 0.4701 MLHFKKGEAVEATHPKNPENRNRLYPASVLRATNNNRLLLQYHTLFSDHPPNNPLRYSLPLSCVRPKLPDLLNPWFKVGDPVDAYCHSHGGAAWCSATVDDILENSRYAVSFWDEKGNVSTERAVIEQCRMRPHREWVHGYWVPPLPSQMDNNIQYTSSKPKKLKADETYKEQPPEMVSMTNTGNLRFKIKYSRRQLKESKFKKGRMVEVRDEDEGYEGAWFVATIVSSVGKDMFLVEYRDLLADDGTHQLLQEVVYEKFIRPCPPEVPSVSSFKQFQEVDAWYNDAWWEGVVLAVVNSSEYFVSFMHNDVLRFESSKLRPHQDWFDGKWVMASKGSRELTKKFGDVMSKAKNLTGNKIILKCLKSLEPELEQMPRILMSGSRNSSIQFASHLYKGAKVEVRSDEEGYQGAWYTAIIVNSLQNGKYVVEYLTLKTNDLTEQLREEADASDIRPVPPDIQHRHRYVLREWVDAWYNDGWWKGQVCGFACFRYSVYFWPTKEQLEFEHCHLRPHQEWIDGRWVHA* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0118 523 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 182 523 - -
Amo04g0118 523 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 95 171 - -
Amo04g0118 523 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 3 113 - -
Amo04g0118 523 Pfam Agenet domain 7 69 IPR008395 -
Amo04g0118 523 Pfam Agenet domain 396 456 IPR008395 -
Amo04g0118 523 Pfam Agenet domain 79 134 IPR008395 -
Amo04g0118 523 Pfam Agenet domain 205 266 IPR008395 -
Amo04g0118 523 PANTHER AGENET DOMAIN-CONTAINING PROTEIN 95 171 - -
Amo04g0118 523 PANTHER AGENET DOMAIN-CONTAINING PROTEIN 3 113 - -
Amo04g0118 523 PANTHER AGENET DOMAIN-CONTAINING PROTEIN 182 523 - -
Amo04g0118 523 MobiDBLite consensus disorder prediction 1 22 - -
Amo04g0118 523 Gene3D - 384 462 - -
Amo04g0118 523 Gene3D - 190 277 - -
Amo04g0118 523 MobiDBLite consensus disorder prediction 1 18 - -
Amo04g0118 523 SMART agenet_At_2 74 139 IPR014002 -
Amo04g0118 523 SMART agenet_At_2 391 459 IPR014002 -
Amo04g0118 523 SMART agenet_At_2 272 327 IPR014002 -
Amo04g0118 523 SMART agenet_At_2 462 517 IPR014002 -
Amo04g0118 523 SMART agenet_At_2 2 72 IPR014002 -
Amo04g0118 523 SMART agenet_At_2 200 269 IPR014002 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0118 Amo-Chr4 2001734 2005129 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0118 402 515 PHD Transcription Factor Family AT5G58610 25.185 1.91e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0118 - - adu:107483399 1106.66