Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0086 ATGCGGCTGAAACTGAGACCATCTACAATGACATCGATTGCAGCAACCACGAGGATAAATAGAAGGAGCGAAAATAATCTTTCGAAATTTGCTTGTTTGACAGAGAGTGAATCAGACAACCTTAGATATGGCTATAAATGGCGCAAGTACGGTAAAAAAACCGTGAGAAACAGCCCTTACCCAAGGAACTATTATCATTGCACAGCAATTGGTTGCAATGTGAAGAGGAGAGTGGAGCGGTGGTTAGATGATCCCACCCATGTATTAACCACCTATGAGGGTCTACACCTTCATGATTTGCCACCGATCTCCTCTACTCTTTTGAAGTCCTTCGGCTTCTACAACAACTGCACCACTGGCCCCAAACCTCACAGAGGCAACTGTAGCTGTCGATGTAAAATGCCACTTATTGATTTAGTAAAAGAAGGAGACTTTGGTCCTTCTTTGTATGAGTGGTTAGGCATCGCCCATGAGGATGCTCCACCAGTTAAAAGACCAGTAAAGCATCCTCTTTGTTCTTTTCCTCCGGCCGCAATTGTTCTAGAATCTTCTAAAACAGTTGAACAATCACAAAACTCATCCTTTTCCTTAATCGCATCCAATCTTGACGTCGCTGTTGGTAACAACAATAATTGCAATAGAGTTTCCGGGATTAAACGTCCAGCAAAATCTGTTGTCGGTGACGGTGGAAATCAAAGTCTGAGAAGTGATGATGAACCTGGTGATGAAAAAATTAATATTATAACTAGGCTGAAACTGAGCCCATCTACAATGACATCGATTGCAGCTACCATGAAGATAAATAGAAGGAGCGAAAATAATCTTCCAAAACTTGCTTTCTTGACGGAGAGTGAATCAGACAACCTTGAAGATGGTTATAGATGGCGCAAGTACGGTCGAAAAACCGTGAGAAACAGCCCTTATCCAAGGAACTACTATCGTTGCACAACAATTGGTTGCAATGTGAAGAAGAGAGTAGAGCGGTGGTTAGATGATCCCACCCATGTATTAACCACCTATGAGGGTCTACACCTTCATGCTTTGCCACCGATCCCCCCTACTCCTTTTAAGTCCTTCAGCCTCTACAAAAACTGTACCACTGGCCCCAAACCTGACGGAGGCAGCTGTAGCTGTCGATGTAAATGTGCAGTCACAGTTGCAGGTGCAGGTGCAGATGCAGGGGAACAAAATCGTGCTAATAACGCTATTACTAGTGTTCATCTTAGAACTGTCAGTGGTGGTAGCGGTGTTAATGACGGTGGCTCGCAGCGCATTGTGGCAGGTGAAAATGAATTTAATTATAACAAACACATGCAGAATGTAGAAAAAGCAATTACACCAATACTGTTACAGAACTTCAAGTTAATTGCTCCACAGACTTTCTTGAATAATGCTACTCCCATGACTGTTACTAATAATGGTCATTACCAATCATCACTGATGAGTAGTGTTCATCATGGTAACAATCATCGTCAAGATTGTTTTGGTGCTGGATCTTCAAATGGTGGTGCCGAGGATTCGTTTAGGAAGAAGAGCACTGGTACCGGGCTGCTTGAAGATATTGTTAATTTCTCATGA 1578 0.4278 MRLKLRPSTMTSIAATTRINRRSENNLSKFACLTESESDNLRYGYKWRKYGKKTVRNSPYPRNYYHCTAIGCNVKRRVERWLDDPTHVLTTYEGLHLHDLPPISSTLLKSFGFYNNCTTGPKPHRGNCSCRCKMPLIDLVKEGDFGPSLYEWLGIAHEDAPPVKRPVKHPLCSFPPAAIVLESSKTVEQSQNSSFSLIASNLDVAVGNNNNCNRVSGIKRPAKSVVGDGGNQSLRSDDEPGDEKINIITRLKLSPSTMTSIAATMKINRRSENNLPKLAFLTESESDNLEDGYRWRKYGRKTVRNSPYPRNYYRCTTIGCNVKKRVERWLDDPTHVLTTYEGLHLHALPPIPPTPFKSFSLYKNCTTGPKPDGGSCSCRCKCAVTVAGAGADAGEQNRANNAITSVHLRTVSGGSGVNDGGSQRIVAGENEFNYNKHMQNVEKAITPILLQNFKLIAPQTFLNNATPMTVTNNGHYQSSLMSSVHHGNNHRQDCFGAGSSNGGAEDSFRKKSTGTGLLEDIVNFS* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0086 525 SMART WRKY_cls 289 348 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo04g0086 525 SMART WRKY_cls 41 100 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo04g0086 525 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 231 358 IPR044810 GO:0003700
Amo04g0086 525 Gene3D WRKY domain 275 350 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo04g0086 525 Gene3D WRKY domain 26 102 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo04g0086 525 ProSiteProfiles WRKY domain profile. 284 349 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo04g0086 525 ProSiteProfiles WRKY domain profile. 36 101 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo04g0086 525 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 231 358 - -
Amo04g0086 525 SUPERFAMILY WRKY DNA-binding domain 282 349 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo04g0086 525 Pfam WRKY DNA -binding domain 44 98 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo04g0086 525 Pfam WRKY DNA -binding domain 290 346 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo04g0086 525 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 29 103 - -
Amo04g0086 525 SUPERFAMILY WRKY DNA-binding domain 37 101 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo04g0086 525 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 29 103 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0086 Amo-Chr4 1627575 1633236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0086 277 352 WRKY Transcription Factor Family AT5G49520 69.737 5.30e-32 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo04g0086 WRKY 1.4e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0086 - K18835 adu:107483375 790.415