Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0084 ATGCATACCAGCTATGTTGTGGATGAAAAATTTGTCCCAAAGGTGGGAATGATTTTTAAGACACTAGAAGAAGCTGGAAAGTTCTACAAACATTATTCCAAACTTGTTGATTTTTCTACCAAAATAAGAAACAAGACTTGGGACGAAGACAAAATTAAGAATAAACTAATTGTATGCTCCAGAGAGGGGAGGTGGAAATCTATATCTCCAACTTTGAAGACATACCCTTCAGTTGGGTTAAATTGTTTAGCCAGAATTTACGTACACATAATGAAGGATATTGGTCTTTGGACAATTTTCAAAGTTGTTTTGAATCACTCACATCCTTGTTGTGCAGACCAGGCCGAGATGCTCAAACAACACAGGGAGCTTATTTCGATTTGGTATGCAGAGCTATACGATGATCGCCATATATGGATTCCGGTTTACTTGGATCACCACTTTTGGGTTGGGATGAGAAGCACGCAAAGGATTGAGAGTATGCATTCATTTTTCAACAAGTTCATCACACGGAATAGCTCCTTGAGACAATTTGTGAAGCAATATGACAATTGCCTAGCAAGCAGAGAGCAAGCAGAGAGAGAATTCGATGCTGCAGATTTTCATACCGTGATACCGTGTACAACAAAATCAACAATAGAGGCACAGTTTCAGCATGTATATACCCATGAGAAGTTCAAGGAATTTCAAACTCAATTCAGAGGTAAAGTGAAATGTATCACAAGATCAATGCATTCCACCCTAGGTTTCATAACATATGAAGTAATAGAGCAGGTTTCCAACTCCACATTCAATAAGTTTGTCGTCACCTACGACGTAGTATCACGAGATGTAAAGTGTCATTGCTTGCTGTTTGAGTTTAGGGACATATTGTGCCGTCATTCCCTAAGTGTCCTAAGCTTTGAGCGAGTGGATAACGTGGCACCGAAATACATATTGGAACGTTGGAGCAAGAACATAAAGAGAAGGCATACACACATTAAGAACAGCCAAGATGAACCTCTACTGGAGCCAAGAAGTAAGAGATTTGACGAATTGGTGTTTCAGTCACACAATATATGTGAATTTGCATCTGAGTCTGAAGAGTTGACCGGAATTTTGCACCGAGCATTTGACAAG 1119 0.395 MHTSYVVDEKFVPKVGMIFKTLEEAGKFYKHYSKLVDFSTKIRNKTWDEDKIKNKLIVCSREGRWKSISPTLKTYPSVGLNCLARIYVHIMKDIGLWTIFKVVLNHSHPCCADQAEMLKQHRELISIWYAELYDDRHIWIPVYLDHHFWVGMRSTQRIESMHSFFNKFITRNSSLRQFVKQYDNCLASREQAEREFDAADFHTVIPCTTKSTIEAQFQHVYTHEKFKEFQTQFRGKVKCITRSMHSTLGFITYEVIEQVSNSTFNKFVVTYDVVSRDVKCHCLLFEFRDILCRHSLSVLSFERVDNVAPKYILERWSKNIKRRHTHIKNSQDEPLLEPRSKRFDELVFQSHNICEFASESEELTGILHRAFDK 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0084 373 Pfam FAR1 DNA-binding domain 27 110 IPR004330 -
Amo04g0084 373 ProSiteProfiles Zinc finger SWIM-type profile. 267 303 IPR007527 GO:0008270
Amo04g0084 373 Coils Coil 175 195 - -
Amo04g0084 373 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 9 117 IPR031052 GO:0006355
Amo04g0084 373 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 117 334 IPR031052 GO:0006355
Amo04g0084 373 PANTHER OS03G0843700 PROTEIN 9 117 - -
Amo04g0084 373 PANTHER OS03G0843700 PROTEIN 117 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0084 Amo-Chr4 1615685 1617723 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo04g0084 FAR1 4.9e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0084 - - aip:110267379 421.394