Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0082 ATGGATGATTCAACCTCAGATTGTCAGCTGAATCAGGGCGAAGTGGATTATGAATTTGAATCTAACGAAGTTCCTAAGCCTCTCTCTGTTGTTGATGACCAGTTTGTTCCCAAGGTTGGAATGACCTTTACCACTCTTGAAGATGCTGAAAAATTTTATAGGAACTACGCCAAGGCTGTAGGGTTTTCTACAAGAGTTTGGAGTACAAATAGGAAGGGAAACGAGATTAAGAATCAATTGATTACATATAGCAGAGAGGAAAAATGGAAATCTAAAATATCTCCAACCGAGAAGATGAATCCGACAGCCGATTTAAACTGTCTTGCAAGAATTTATATACACACACTAAAGGATGTTGGTGCTTGGATCATTTCAAAGGTTGTGTTGGATTATTCACACTCTTGCTGTCCAAGCAAAGCAGAGATGCTCAAACAGCACAGGAAACTAAGCATGTCCATTCATCCCGAGGTAAAATGCCAATGCTTATTATTCGAGTCAAGAGGGATACTGTGTCGTCACGCACTAAGCGTGTTAAGCTTTGAACAAGTAAGCCAAGTGTCACCTAGAAATATACTGGAACGATGGAGCAAGAAGGTAAAGAGGCGACACACATACATCAAGAGCAGCCACGATGAGCCACTGTTGGAGCCAAGAAGCAAGAGGTTTGACGAATTGATTTTTTGTTTGCAAAATGTTTGCGAATTTGCATCAGAATCGGAGGAGCTGACTACAATTCTGCACCGTGCGTACAATACCATCATGGTTGAGATGGAAGAATTGAAAGCCAAAAGGAAGGGGACATCTTCTTTATCTCACGAAGACGCCAACTTGGAATCTGTTAACGAGCTTCAGAGCCCTCCAAGGATTCGAACAAGAGAACATCCAAAAAATAGGCTCGGTTCAAAGTTGGACAAACAGATTAAAAATGCCTCAAAGAAGAAGAAAACAAAAGCTTTAAACGAGTTAAACCTCTTTAATGCTGGATCAGTGGTGCATTCAGATTCTAGCCAATATCAAGGACGTGTTATGAATTATCAATTCAGGGTACCAGCAATAGCGGATAACTCTTTGGGTGTATAG 1080 0.4083 MDDSTSDCQLNQGEVDYEFESNEVPKPLSVVDDQFVPKVGMTFTTLEDAEKFYRNYAKAVGFSTRVWSTNRKGNEIKNQLITYSREEKWKSKISPTEKMNPTADLNCLARIYIHTLKDVGAWIISKVVLDYSHSCCPSKAEMLKQHRKLSMSIHPEVKCQCLLFESRGILCRHALSVLSFEQVSQVSPRNILERWSKKVKRRHTYIKSSHDEPLLEPRSKRFDELIFCLQNVCEFASESEELTTILHRAYNTIMVEMEELKAKRKGTSSLSHEDANLESVNELQSPPRIRTREHPKNRLGSKLDKQIKNASKKKKTKALNELNLFNAGSVVHSDSSQYQGRVMNYQFRVPAIADNSLGV* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0082 359 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 26 145 IPR031052 GO:0006355
Amo04g0082 359 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 154 259 IPR031052 GO:0006355
Amo04g0082 359 MobiDBLite consensus disorder prediction 264 284 - -
Amo04g0082 359 Pfam SWIM zinc finger 158 179 IPR007527 GO:0008270
Amo04g0082 359 ProSiteProfiles Zinc finger SWIM-type profile. 149 182 IPR007527 GO:0008270
Amo04g0082 359 SMART 26again6 157 184 IPR006564 GO:0008270
Amo04g0082 359 PANTHER OS03G0843700 PROTEIN 26 145 - -
Amo04g0082 359 PANTHER OS03G0843700 PROTEIN 154 259 - -
Amo04g0082 359 Pfam FAR1 DNA-binding domain 51 136 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0082 Amo-Chr4 1518804 1521807 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo04g0082 FAR1 1.4e-07 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0082 - - adu:110276980 333.954