Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0065 ATGATGAATCTTCTTTCTCTATGTTGGAAGCCGTTCGGCCACGGCGGCGGTGATGCTGTCTCTTCCGCCGCCGGAAGGGAAGGCAAGGACGGCCTTCTCTGGTTCCGCGATGTCGGAAGGTACGGCTCCGGCGAATTCTCGATGGCCGTTGTCCAGGCTAACCAGGTCCTCGAGGATCAGAGCCAGATCGAGTCCGGTCCCCTCGGAACCTTCGTCGGCGTCTACGACGGCCACGGTGGCCCCGACGCCTCACGCTATGTCTGCGATAACTTGTTCCGCAACTTTCAAGCTGCGTCAGCTGAGTCACAGGGGGTTGTGACGGCCGAGACTATTCAAACTGCGTTCCGGAGAACTGAGGAAGGGTTCACTGCTCTTGTTTCTGATCTGTGGAGTACTCGGCCTCAAGTTGCCACTACCGGGACATGCTGTCTGGTTGGAGTGATCTTCCAGCAGACGCTATTCGTGGCGAATCTAGGAGATTCCCGTGTTGTGTTGGGTAAGAAAGTTGGCAACACTGGTGGGGTAGCAGCGATTCAGCTATCTGCTGAACACAATGCAAATCTTGAGGCTGTTAGGCAGGAGCTTAAAGAATTGCATCCTGATGATCCCCAAATTGTTGTCCTTAAACATGGAGTGTGGAGAGTAAAAGGCATTATTCAGGTTTCTAGATCTATAGGTGACGTATATATGAAACATGCGCAGTTTAACCGGGAACCAATTAATCCCAAATTCAGACTTCCTGAACCAATGAACATGCCTATCTTGTCTGCTAATCCAACTATTATTTCTCATCCTCTCCAACCAAATGATTCCTTCCTTATATTTGCATCAGATGGTTTATGGGAGCACCTGAGTAATGAAAGAGCAGTGGATATTGTTCACAGCAATCCACGTGTGGGTAGTGCGAAGAGGCTAGTGAAGGCTGCACTACAGGAAGCAGCAAGAAAACGAGAAATGAGATATTCAGACCTGAGGAAGATAGACAAGAAGGTTCGGCGCCATTTTCACGATGATATAACTGTTATTGTTTTATTCTTAAACCACGACCTTATCTCCAGAGGCACCCTTCTCCACCCTCCACTATCCATTCGCAGCGCCCTCGATCACTGA 1110 0.4973 MMNLLSLCWKPFGHGGGDAVSSAAGREGKDGLLWFRDVGRYGSGEFSMAVVQANQVLEDQSQIESGPLGTFVGVYDGHGGPDASRYVCDNLFRNFQAASAESQGVVTAETIQTAFRRTEEGFTALVSDLWSTRPQVATTGTCCLVGVIFQQTLFVANLGDSRVVLGKKVGNTGGVAAIQLSAEHNANLEAVRQELKELHPDDPQIVVLKHGVWRVKGIIQVSRSIGDVYMKHAQFNREPINPKFRLPEPMNMPILSANPTIISHPLQPNDSFLIFASDGLWEHLSNERAVDIVHSNPRVGSAKRLVKAALQEAARKREMRYSDLRKIDKKVRRHFHDDITVIVLFLNHDLISRGTLLHPPLSIRSALDH* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0065 369 CDD PP2Cc 46 346 IPR001932 -
Amo04g0065 369 ProSiteProfiles PPM-type phosphatase domain profile. 42 346 IPR001932 -
Amo04g0065 369 PANTHER PROTEIN PHOSPHATASE 2C 42-RELATED 1 369 - -
Amo04g0065 369 Pfam Protein phosphatase 2C 69 316 IPR001932 -
Amo04g0065 369 SMART PP2C_4 32 344 IPR001932 -
Amo04g0065 369 ProSitePatterns PPM-type phosphatase domain signature. 71 79 IPR000222 GO:0043169
Amo04g0065 369 Gene3D - 37 354 IPR036457 -
Amo04g0065 369 PANTHER ALPHABET, ISOFORM E-RELATED 1 369 - -
Amo04g0065 369 SUPERFAMILY PP2C-like 54 347 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0065 Amo-Chr4 1234340 1238478 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0065 1 366 PP2C-type Phosphatase Gene Family AT4G38520 59.467 6.62e-161 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0065 K01102 - gmx:100811922 653.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3274 01 104959496 104963792 Amo04g0065 04 1234340 1238478 PCT
Amo04g0065 04 1234340 1238478 Amo01g3274 01 104959496 104963792 PCT