Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0058 ATGGCTTCTTCTTTTCATGCTTCTTCAGCAATAATATCATCCATAATAGTGTCAATAATTATTCTCATTTGCATGCCATGTTCTGCTTTTGGCTTTATTAATGAGAAAGAGGTTATAGATGCTCCTTTGTTAACACAAAAGTTAGGAATTAATCGCACCATCAAAGTAGATATTAATGGCAATGGGGACTTCAAATCTGTTCAAGCTGCCATTGATTCCATTCCCGAAGGGAATTCCAATTGGGTCATTGTCCATGTTAGGAAAGGAGTATACAGAGAAAGGGTACACATACCAAAGACTAAGCGTTACATATTCATGAGAGGGAATGGAAAGGGAAGAACAGCCATAGTTTGGTCTCAAAGCTCCTCCGATAACATTGATTCTGCTACCTTCAAAGTTGAAGCCCGTGATTTCATTGCATTTGGAATTAGCTTCAAGAACGAAGCACCAACGGTACTCATAACACTCTCTTTGATTACAAAGGCAGACACTACTATGAGTCTTGCTACATTCAAGGCTCAATTGATTTCATTTTTGGCCGGGTGTGAGATATTTGTAATTGATGACAAAAGGGTCACAATTCATGGGTCAATCACAGCACAAAACAGGGAGAGTGAACGAGAGATAAGTGGATTCATATTCAATAAATGCAGGGTTTATGGCATTGGTGGGGTGTACCTAGGAAGGGCTAAGGGTCCTTATTCTAGGACCATTTTTGCTCACTCTTATCTCTCCAAGACTGTTGTTCCTGAGGGTTGGACCAATTGGAGCTATGATGGTCCCACAAAGAATCTGTATCATGCTGAGTACAAGTGCTATGGACCAGGAGCCACAAGAGAGGGAAGAGCTTCATGGTCAAGACAACTTAGTGATCAAGAAGTTGCTTCATTTTTGTCTGTTGATTACATAGATGGCAAGAATTGGTTGCCAGCGTGGCACTAA 942 0.4066 MASSFHASSAIISSIIVSIIILICMPCSAFGFINEKEVIDAPLLTQKLGINRTIKVDINGNGDFKSVQAAIDSIPEGNSNWVIVHVRKGVYRERVHIPKTKRYIFMRGNGKGRTAIVWSQSSSDNIDSATFKVEARDFIAFGISFKNEAPTVLITLSLITKADTTMSLATFKAQLISFLAGCEIFVIDDKRVTIHGSITAQNRESEREISGFIFNKCRVYGIGGVYLGRAKGPYSRTIFAHSYLSKTVVPEGWTNWSYDGPTKNLYHAEYKCYGPGATREGRASWSRQLSDQEVASFLSVDYIDGKNWLPAWH* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0058 313 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 177 312 - -
Amo04g0058 313 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 13 154 - -
Amo04g0058 313 PANTHER PECTINESTERASE 67-RELATED 177 312 - -
Amo04g0058 313 Pfam Pectinesterase 179 305 IPR000070 GO:0030599|GO:0042545
Amo04g0058 313 Pfam Pectinesterase 55 151 IPR000070 GO:0030599|GO:0042545
Amo04g0058 313 SUPERFAMILY Pectin lyase-like 50 311 IPR011050 -
Amo04g0058 313 PANTHER PECTINESTERASE 67-RELATED 13 154 - -
Amo04g0058 313 Gene3D - 48 170 IPR012334 -
Amo04g0058 313 Gene3D - 171 313 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0058 Amo-Chr4 1175138 1176927 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0058 51 309 Carbohydrate Esterase AT5G47500 31.250 5.77e-44 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0058 - - mtr:MTR_2g033970 424.861