Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0054 ATGGGAACTTCAGAAGCAAAAGAAGAAGAGCTTGTGAAGAAGATAGAGAAGCTTGAAGCTGGCCATGTTCAGCTGAAGCATGAGATGTCGAAGCTGAAGCTATCTGAACGCCGCCATCATTACCGCCACAGGTCGCACTCCTTGTCGCCGCAGCGTTCGAGGCTTGGCGGTTGTGGCGGTGGCGGGAGTGCTGCTGCTGGTTGTAACAACAAAGGGTCTTCTTCTTCACCCTTGAAGAGGGAGAGTCGCAGCAGCAATAATCATAATCATAATCACAATCAGAACCAGAATCAGAATGAAGATGGTGATGGTGATTGTGATGGTGATGGTGATGTTGTTGGTGTGAATGTTGGCCTTAGTGAGAAGCAGTATATGAACATTTTGCAGTCAATGGGGCACTCGCTTCATATTCTGGATCTTCAATGCCGGATTATATATTGGAATCCTAGTGCCGAAAATCTGTATGGTTATGCAGCAGTAGAGGCTCTTGGGAAAGATGGGATTGAGCTGCTTGTAGACCCTATTGATTTCGGCTTAGCATATGATGTTTTCAACCATGTCACTGTGGGGGAGAGTTGGAGCGGTCAGTTCCCTGCCAAGAACAAGATGGGGGAGAAATTTTCAGTTGTGGCAACCAACACACCATTCTATGATGACGATAGGAAGTTGATTGGGGTTATCTGTGTGTCCATTGATTCTAGACCCTTTCTTGAAACTCGAGCTACTTTATCAGATGTGAAGAATGCTGCACCAGGTTCAGACTTGGATTATAACCACGCGAAGAGTGGCATTTCAAATAAACTTGGCCTTGACTCTCAGCAGCCACTTCAAGTTGCTCTAGCATCCAAAATTTCTAATTTGGCATCAAAGGTGAGTAATAAAGTTAAGTCAAGAATGCGGACAGGAGAAAATGGTGTTGACCGTTATGGTTGGAGCGGAGAAAGTCATCATTCTGATCAGAGTTTTTCGGATTGTGTTTTTTCTGACCAGAAAGAGGATGGTAATTCCAGTGGAGCTAGCACTCCCAGAGGTGATGTACCACCTCCATTCAGTGTATTTTGTCATGTTGAAGAGAAATCACCAGCTAAATCTTTGAGAGACTCTGGTGATGATGGCGAAGGAAAACCAATTCACAAGATCATAACTTCTAAAGCTGAAGCATGGATTCAAAAGAGAACATTGTCATGGCCATGGAGAGGAAATGGTCAAGCTGGATCCGAGGCAAGAAATGTTTCTGTTGCTAGGCCACTGGTGCAGAATGATCAAGAAAATGAACTGGTTAATCAGATGAATCTTTCTTCCGAGTCCAAGATGGAAGTCCAGGCAGGTAATCGGCCTGTTAATAATGAGGCTTCAGGATCGTGGTCCTCAGTTAACGTTAACAGTACTAGCAGTACCAGCAGCTGCGGCAGTGGCAGCAGTGGTGCTGTCAATAATAAAGTGGATATTGATACCGATTGCTTGGATTATGAAATCTTGTGGGAGGACCTCACAATTGGAGAACAAATTGGGCAAGGTTCTTGTGGAACTGTATATCATGCCCTGTGGTATGGATCAGATGTTGCGGTCAAAGTATTCTTAAAGCAAGAATATTCAGAGGATGTGATACTATCCTTCAGACAAGAGGTGTCTGTCTTGAAAAGACTTCGCCATCCAAATATTATTCTCTTCATGGGGGCAGTGACTTCACCTCAACGTCTCTGCATTGTGACAGAGTTTCTCCCACGTGGAAGCTTGTTTCGTTTGCTCCAAAGAAATACATCCAAACTTGACTGGAGACGGCGAGTTCATATGGCTTTAGATATCGCACGTGGTGTGAATTATCTTCATCGTTGCAGCCCCCCTATTGTTCATCGAGATTTGAAGTCTTCAAATCTCCTAGTTGACAAGAATTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCACGCCTTAAGCATGAAACATATCTCACAACCAAAACAGGAAAGGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGAAATGAACCCTCGGATGAGAAGTCCGATGTGTACAGCTTTGGGGTGATATTGTGGGAACTTGCAACTGAAAAGATCCCGTGGGATACTCTCAATGCAATGCAGGTTATTGGGGCTGTAGGGTTTATGAACCATCGGTTAGAAATTCCGGCAGATGTTGATCCGCAGTGGGCTTCTATAATGGAGAGCTGCTGGCATAGCGATCCGGCTCAGCGACCAACATTCCAGGAACTTGTGGAAAGGCTCAGAGAAATGCAGAGACGACATGCCATTCAGCTCCAGGCGGCTCGTTCTGCCAGCGGTGGAAGCAATCAGAAGGAATCTTAA 2328 0.4523 MGTSEAKEEELVKKIEKLEAGHVQLKHEMSKLKLSERRHHYRHRSHSLSPQRSRLGGCGGGGSAAAGCNNKGSSSSPLKRESRSSNNHNHNHNQNQNQNEDGDGDCDGDGDVVGVNVGLSEKQYMNILQSMGHSLHILDLQCRIIYWNPSAENLYGYAAVEALGKDGIELLVDPIDFGLAYDVFNHVTVGESWSGQFPAKNKMGEKFSVVATNTPFYDDDRKLIGVICVSIDSRPFLETRATLSDVKNAAPGSDLDYNHAKSGISNKLGLDSQQPLQVALASKISNLASKVSNKVKSRMRTGENGVDRYGWSGESHHSDQSFSDCVFSDQKEDGNSSGASTPRGDVPPPFSVFCHVEEKSPAKSLRDSGDDGEGKPIHKIITSKAEAWIQKRTLSWPWRGNGQAGSEARNVSVARPLVQNDQENELVNQMNLSSESKMEVQAGNRPVNNEASGSWSSVNVNSTSSTSSCGSGSSGAVNNKVDIDTDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFLKQEYSEDVILSFRQEVSVLKRLRHPNIILFMGAVTSPQRLCIVTEFLPRGSLFRLLQRNTSKLDWRRRVHMALDIARGVNYLHRCSPPIVHRDLKSSNLLVDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDVYSFGVILWELATEKIPWDTLNAMQVIGAVGFMNHRLEIPADVDPQWASIMESCWHSDPAQRPTFQELVERLREMQRRHAIQLQAARSASGGSNQKES* 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0054 775 PRINTS Tyrosine kinase catalytic domain signature 610 628 IPR001245 GO:0004672|GO:0006468
Amo04g0054 775 PRINTS Tyrosine kinase catalytic domain signature 676 698 IPR001245 GO:0004672|GO:0006468
Amo04g0054 775 PRINTS Tyrosine kinase catalytic domain signature 657 667 IPR001245 GO:0004672|GO:0006468
Amo04g0054 775 PRINTS Tyrosine kinase catalytic domain signature 571 584 IPR001245 GO:0004672|GO:0006468
Amo04g0054 775 PRINTS Tyrosine kinase catalytic domain signature 720 742 IPR001245 GO:0004672|GO:0006468
Amo04g0054 775 MobiDBLite consensus disorder prediction 33 109 - -
Amo04g0054 775 MobiDBLite consensus disorder prediction 438 475 - -
Amo04g0054 775 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 30 773 - -
Amo04g0054 775 CDD PAS 137 232 IPR000014 -
Amo04g0054 775 Gene3D Transferase(Phosphotransferase) domain 1 575 775 - -
Amo04g0054 775 Gene3D PAS domain 133 234 - -
Amo04g0054 775 Coils Coil 8 35 - -
Amo04g0054 775 CDD STKc_MAP3K-like 503 749 - -
Amo04g0054 775 TIGRFAM sensory_box: PAS domain S-box protein 120 232 IPR000014 -
Amo04g0054 775 MobiDBLite consensus disorder prediction 293 349 - -
Amo04g0054 775 MobiDBLite consensus disorder prediction 315 342 - -
Amo04g0054 775 Pfam Protein tyrosine and serine/threonine kinase 497 749 IPR001245 GO:0004672|GO:0006468
Amo04g0054 775 SMART serkin_6 497 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g0054 775 Gene3D Phosphorylase Kinase; domain 1 490 574 - -
Amo04g0054 775 ProSiteProfiles Protein kinase domain profile. 497 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g0054 775 SUPERFAMILY Protein kinase-like (PK-like) 486 749 IPR011009 -
Amo04g0054 775 SMART pas_2 122 189 IPR000014 -
Amo04g0054 775 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 30 773 - -
Amo04g0054 775 Pfam PAS domain 137 232 IPR000014 -
Amo04g0054 775 ProSiteProfiles PAS repeat profile. 120 191 IPR000014 -
Amo04g0054 775 MobiDBLite consensus disorder prediction 67 101 - -
Amo04g0054 775 SUPERFAMILY PYP-like sensor domain (PAS domain) 120 232 IPR035965 -
Amo04g0054 775 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0054 Amo-Chr4 1130004 1137043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0054 9 766 MAP Kinase Kinase Kinase AT3G06620 56.722 0.0 870
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Amo04g0054 PK_Tyr_Ser-Thr 1.7e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0054 - - gmx:100800867 1056.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3294 01 105248180 105252327 Amo04g0054 04 1130004 1137043 PCT
Amo04g0054 04 1130004 1137043 Amo01g3294 01 105248180 105252327 PCT