Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0047 ATGGACGAAGACGGGAAACCTCATTCTCCTCCTCAACCTCTTCCCAACGACGACGAACATTCTAGAAGAAACCGCATCATTGCTAACCTCAAAGACTCTCTCTTGTCTCAGCTCGCTGAATCCAACCCCTCCCTCTCCCTCGAAACACGCCATGTTTCCTCTCTCATTCAGCAGCGTCTCAAGAAGATGTTTCCTTCTTTCCACACCCCCACGCATCCTCCTTATGCACTGATGATACATAGGGCAATATCGGAGCTAAATGAGAATAAAGGGTCCACTGAAAAAGAAATTTCTAATTTCATTGTAAAGAAGTATGAGGATTTGCCATGGGCACATAAGAAGATTTTGGGTATTCAATTAGAGAAGCTTTGCCAGGAAGAGGAGATTGAGTGTAATGAGGGTGGCAGATATGTTCTACAGGCTGATGGTGATGGAATACATGGTGATCGGAAGGGGAGACAGGAATGTAAGAGTAAGAGGAAGAAGAGGGGAAAGAAGAGAAGTCAGCATAGCATGGATGGAGGTGGAGAGCGAAAGCGGAAAAGAGTAAAAATCTGTGAAGAGGTTGAGAAGAGTGAAAAGCCTAAAGAGGGAAGAGATGAGGCACAACATCAGGTTTATGATTTAGGTGATGTTAGGACTGATGAGCCAATTAGTGTGGTGAGATGGACAGAAGAGAAGGGGGAAGAAGCACTTGACCAGTCAGCTGAAAGGATTGGAGAGCAGAATAAATCACAAGGGGCTGGAGTTGTAGAACAATATGTTGAAGCAGAGCCTCTAGCACAGGAGTCACAGGATCAGTACTCCATAGTGCACCCAGAAACAATTTGTTCATCCCTCCCAACTGTGCCGAATGTTATTGATTACCAGAAGCCACTTGATCTTCCAAATTCAGAATGTGTACTGTCAGAAGGACAATTGAAACAACAAATGTCTTCTTTGGATGTTCCTGAACAAAAGCAAGATGGGAACTCAATATCTGGTGATCCTGAGAAGCATTCTCCAAAGCGCCAATGCAGAGGGAGGCACCTGAAATCTATGCCAGTTGCAGACGATCAAGAGGAGTCCTTTTTACCGTTACGTGACCTTATTCTTGATGCACAAAAGCCCAAGGTAAATATTATCGAGAAGCAGTGGCAGTCATCTCCTCAAGTTCAAGTTGCAGGTCAAGGAACGCACAAGGAACCAACAATGTTTAAAAACAAAGCTATGTTAGCTCCTGAGAATGTTCATAATGATCAGCCGCTGCATGGAAATCAAGGATATGAGAATCCAGTGTCTGGGAATGCTGAGTATTGTCCAGCTAAGCGTCCCAGAGGAAGGCCCTGTAAGTCAGAGACTGATGCAAACAACCCAAGGGAGTATAGTCGTGGCAGAGGCAGAGGCACTGGTAGTGGTCTAGGTCTAGGTCTAGGTCGAGGTAGAGGTAGAGGTAGAGGTAGAGGTTGTGGTCGGGGAAGGCCTCGTAAAATAGATCAAGATGCAAACCATTCTGAGCAGCACCTGCAAACGGATGATCAAGATAAGCAGCTACAGAAAGATGATCAAGATCAGCAGAATTCTAGGGGTAGGGGTAGGGGTAGGGGTAGGGGTAGAGGCAGAGGCATCAGCAGAGGTAGAGGTGATGGTGCATGTCGAGGTAGAGGCAAGGGGACTGGTAGGGGGAGAGGGAGGCCTCGGAAAATAAAGCTAGACACGAACACAAACCAATGTGAGGAGCAGTTACAATCACAAGATCATGCTGAAGGTCTGGTTAACTTAGATAATCCGATTGAGGACGATAATCAAAGTTTGCAGCAGAAGCAACAATCAGATGGTCAGCAGCAACAAGAGCAAGATCAAGGTTTGGTTTCAGAATCAAAACCTGAATCAAAAGAGGCCTCTAAACCTGATATCGGATACAAACCAGAGCCACCAATTGAGACTCAATTACAAGCACCTCAACCTCAGGATAATATGAGTTGGCCAGATACTAGAATCTGGCCTTACACGCTGTTGACCGGTTGCCAACTCGTTCCGATCGAGTTTGAGCGGAATGAATACCTGTTGTCGAGCACAAAGCAAATGGAGTCAACTACCCCCTTCTTCTCCATCATCACGACCCTTATCTTCTACTCCTTAGTCTCACTCTCAGCTTCTTCAAATCCAAACAATCCATTCCCAAAAGAAGCTCTTCCTACTAAATCTGGTTACCTCCCAGTAAGTACATCATCTTCCTCTGCTATCTTCTATGCTTTCTATGAAGCTCATAACTCAACTTTACCTCTCTCCCAAACCCCTCTTCTCATTTGGCTCCAAGGTGGTCCCGGATGCTCCTCCATGATTGGCAACTTCTATGAGCTTGGACCATGGACTCTCACTGATGAATCACCCCTTACACTTCACCCTAACCCTGGTGCTTGGAACAGGATCTTTGGTCTCCTCTTTCTTGATAACCCCATTGGTTCTGGATTCAGTGTAGCAGCAACAACACAAGAAATCCCAACTGATCAAGATGGTGTTGCAAAGCATCTCTTTGCTGCTATAACAAGGTTTGTTGAGCTTGATCCTGTTTTCAAGAACCGTCCTATTTATATTACTGGTGAAAGTTATGCTGGAAAGTATGTTCCTGCTATTGGATACTATATATTAAAGGAGAATTGGCGGCTGCGCGGTTCTAAGAGAGTGAATTTGGCTGGTTTGGCTATTGGAGATGGGTTGACTGACCCTGTTACACAAGTGGTTACTCATGCTGTTAATGCTTATTATATTGGTTTGATCAATGAGAGGCAGAGGAATGAGTTGGAGAAGGATCAATTGGAAGCGGTTAGGTTAGCGCAGATTGGGAATTGGAGCGCTGCAACTGATGCAAGGAATGTGGTTTTGCGAAAGTTGAGGAATGTAACAGGGTTGGCTACTTTGTTTGATTACACAAGGAAAAAGCCCTATGGCGATGATGTAGTTGATAAATTCTTGAACAATGTGGAAGCTAAGAAGGCCTTAGGGGTGAAGAATGAGTCACTTGTGTTTGAAGGATGCAGCGATGTGGTTGGCGCCGTGTTACATGCTGATGTGATGAAGAGTGTGAAGTACATGGTAGAGGAATTGGTGAGGAACACTAGGGTGTTGTTATATCAAGGTCAGCATGATATTCAGGATGGAGTGGTTCAGGTCGAGGCGTGGGTGAAGACGATGAAGTGGGAAGGGATTGAGGATTTTTTGAATGCAGAGAGGAAGATATGGAAGGTGAACGGAGAGCTTGCTGGCTATGTCCAACAATGGAAGTCACTCACTAATGTTGTGGTGTTAGGGGCAGGGCATCTTTTACCTTCTGATCAACCTGTGACATCTCAAGCAATGATTGAAGATTGGGTCCTTGAAAAAGGTTTATTTCAAAGTTTGCAGCATCATGAAAATGTGTCAAGAAATTCATTGTGA 3417 0.4495 MDEDGKPHSPPQPLPNDDEHSRRNRIIANLKDSLLSQLAESNPSLSLETRHVSSLIQQRLKKMFPSFHTPTHPPYALMIHRAISELNENKGSTEKEISNFIVKKYEDLPWAHKKILGIQLEKLCQEEEIECNEGGRYVLQADGDGIHGDRKGRQECKSKRKKRGKKRSQHSMDGGGERKRKRVKICEEVEKSEKPKEGRDEAQHQVYDLGDVRTDEPISVVRWTEEKGEEALDQSAERIGEQNKSQGAGVVEQYVEAEPLAQESQDQYSIVHPETICSSLPTVPNVIDYQKPLDLPNSECVLSEGQLKQQMSSLDVPEQKQDGNSISGDPEKHSPKRQCRGRHLKSMPVADDQEESFLPLRDLILDAQKPKVNIIEKQWQSSPQVQVAGQGTHKEPTMFKNKAMLAPENVHNDQPLHGNQGYENPVSGNAEYCPAKRPRGRPCKSETDANNPREYSRGRGRGTGSGLGLGLGRGRGRGRGRGCGRGRPRKIDQDANHSEQHLQTDDQDKQLQKDDQDQQNSRGRGRGRGRGRGRGISRGRGDGACRGRGKGTGRGRGRPRKIKLDTNTNQCEEQLQSQDHAEGLVNLDNPIEDDNQSLQQKQQSDGQQQQEQDQGLVSESKPESKEASKPDIGYKPEPPIETQLQAPQPQDNMSWPDTRIWPYTLLTGCQLVPIEFERNEYLLSSTKQMESTTPFFSIITTLIFYSLVSLSASSNPNNPFPKEALPTKSGYLPVSTSSSSAIFYAFYEAHNSTLPLSQTPLLIWLQGGPGCSSMIGNFYELGPWTLTDESPLTLHPNPGAWNRIFGLLFLDNPIGSGFSVAATTQEIPTDQDGVAKHLFAAITRFVELDPVFKNRPIYITGESYAGKYVPAIGYYILKENWRLRGSKRVNLAGLAIGDGLTDPVTQVVTHAVNAYYIGLINERQRNELEKDQLEAVRLAQIGNWSAATDARNVVLRKLRNVTGLATLFDYTRKKPYGDDVVDKFLNNVEAKKALGVKNESLVFEGCSDVVGAVLHADVMKSVKYMVEELVRNTRVLLYQGQHDIQDGVVQVEAWVKTMKWEGIEDFLNAERKIWKVNGELAGYVQQWKSLTNVVVLGAGHLLPSDQPVTSQAMIEDWVLEKGLFQSLQHHENVSRNSL* 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0047 1138 MobiDBLite consensus disorder prediction 140 205 - -
Amo04g0047 1138 MobiDBLite consensus disorder prediction 169 205 - -
Amo04g0047 1138 MobiDBLite consensus disorder prediction 437 455 - -
Amo04g0047 1138 MobiDBLite consensus disorder prediction 535 549 - -
Amo04g0047 1138 Pfam Serine carboxypeptidase 724 1118 IPR001563 GO:0004185|GO:0006508
Amo04g0047 1138 PANTHER CARBOXYPEPTIDASE 708 1125 - -
Amo04g0047 1138 PRINTS AT-hook-like domain signature 551 561 IPR017956 GO:0003677
Amo04g0047 1138 PRINTS AT-hook-like domain signature 480 491 IPR017956 GO:0003677
Amo04g0047 1138 PRINTS AT-hook-like domain signature 436 446 IPR017956 GO:0003677
Amo04g0047 1138 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 71 141 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo04g0047 1138 ProSitePatterns Serine carboxypeptidases, serine active site. 859 866 IPR018202 GO:0004185
Amo04g0047 1138 Gene3D alpha/beta hydrolase 705 1129 IPR029058 -
Amo04g0047 1138 PRINTS Carboxypeptidase C serine protease (S10) family signature 845 870 IPR001563 GO:0004185|GO:0006508
Amo04g0047 1138 PRINTS Carboxypeptidase C serine protease (S10) family signature 1090 1103 IPR001563 GO:0004185|GO:0006508
Amo04g0047 1138 PRINTS Carboxypeptidase C serine protease (S10) family signature 797 809 IPR001563 GO:0004185|GO:0006508
Amo04g0047 1138 PRINTS Carboxypeptidase C serine protease (S10) family signature 810 820 IPR001563 GO:0004185|GO:0006508
Amo04g0047 1138 SMART AT_hook_2 482 494 IPR017956 GO:0003677
Amo04g0047 1138 SMART AT_hook_2 553 565 IPR017956 GO:0003677
Amo04g0047 1138 SMART AT_hook_2 436 448 IPR017956 GO:0003677
Amo04g0047 1138 MobiDBLite consensus disorder prediction 485 524 - -
Amo04g0047 1138 MobiDBLite consensus disorder prediction 304 343 - -
Amo04g0047 1138 Pfam linker histone H1 and H5 family 72 130 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo04g0047 1138 SMART h15plus2 69 135 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo04g0047 1138 MobiDBLite consensus disorder prediction 154 168 - -
Amo04g0047 1138 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 708 1125 IPR001563 GO:0004185|GO:0006508
Amo04g0047 1138 MobiDBLite consensus disorder prediction 304 324 - -
Amo04g0047 1138 MobiDBLite consensus disorder prediction 586 655 - -
Amo04g0047 1138 MobiDBLite consensus disorder prediction 590 617 - -
Amo04g0047 1138 Gene3D - 68 165 IPR036388 -
Amo04g0047 1138 SUPERFAMILY alpha/beta-Hydrolases 726 1119 IPR029058 -
Amo04g0047 1138 MobiDBLite consensus disorder prediction 1 24 - -
Amo04g0047 1138 MobiDBLite consensus disorder prediction 618 632 - -
Amo04g0047 1138 MobiDBLite consensus disorder prediction 405 569 - -
Amo04g0047 1138 SUPERFAMILY "Winged helix" DNA-binding domain 69 135 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0047 Amo-Chr4 878036 883812 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0047 1017 1118 Calmodulin-binding Proteins AT2G22960 26.214 2.09e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0047 K09645 - aip:107638978 1074.69