Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g3001 ATGACTTTTAACACCCTTGAAGATACTGCAAAATTTTACAAGAACTATGCGAAGGCTGCAGGTTTTTCTACAAGAGTTCGGAGCACAAATAAGAAGGGAAACGAAATTAAGAATCAATTAATTACATGTAGCAGAGAGGAAAAACGGAAATCTAAAATATTTCCAATCGAGAAGATAAATCCCACAACTGGTTTAAATTGCCCTGCAAGAATTTATATACACACAATGAAGGATGTTGGTGCTTGGATCATTTCGAAGGTCATGCTTAAACAGCACAGGGAACTAAGCATGTCCATCTGTCGTACAATAGAGAATAACGAGGAAGCCGGACACAAAGGAGCGAGAGCATGCAGTCATTTTTTAACAAGTTCATTACCCGGAATGGATCACTTATCCAATTTGTCAAACAATACGATAATTGCCTCGGAAGCAGGGAGCAGAGAGAGAGAGAGAATCCGATGCTGTAGATTTTCACACCGTCATACCGTAGGAAAGGTGAATTGCAGCACAAGATTAACGAACTCTGCTCAAGGCTATTTAGTATACGAAGTTGGTGAAGAAGTTTCTAGCTCAATATTCAACAAGTTTGCGGTTACTTACGACTCAGTAGCAGCCCAAGTGAAATGCCAGTGCTTATTATTCGAGTCAAAAGGGATATTGTGCCGTCACGTCCTAAGTGTGTTAATCTTTGAACGAGTAACCCAAGTGTCACCGAGATATATATTGGAACGATGGAGCAAGAAGCCACTGTTGGAGCCAAGAAGCAAGAGGTTTGACGAATTGGTGTTTCGTTCGCAAAATATATGCAAATTTGCATCAGAATCCGAGGAGTTGACTGCCATTCTACACCGTGCCTACGATAACATCATGGTTGAGATGGAAGAACTGAAAGCCAAAAGGAAGGGGACATGTTCATTATCTCATGAAGATGCAAACTTGAAATCCGTTAACGAACTTCAAAGTCCTCCAAGGATTGTAAATACCTCAAAGAAGAAGAAAACGAAAGCTCTAAACGAGTTAAACCTTTTTGATGCTACATCAGTGCTGCAAGCAAATTCCAGCCAATATCACAGACATGTTATGAATTATCAGTTTAGGAAACCAGCAGTAGGGGATAATGCTGCTATTTATGTTAGAAATTAG 1143 0.3998 MTFNTLEDTAKFYKNYAKAAGFSTRVRSTNKKGNEIKNQLITCSREEKRKSKIFPIEKINPTTGLNCPARIYIHTMKDVGAWIISKVMLKQHRELSMSICRTIENNEEAGHKGARACSHFLTSSLPGMDHLSNLSNNTIIASEAGSRERERIRCCRFSHRHTVGKVNCSTRLTNSAQGYLVYEVGEEVSSSIFNKFAVTYDSVAAQVKCQCLLFESKGILCRHVLSVLIFERVTQVSPRYILERWSKKPLLEPRSKRFDELVFRSQNICKFASESEELTAILHRAYDNIMVEMEELKAKRKGTCSLSHEDANLKSVNELQSPPRIVNTSKKKKTKALNELNLFDATSVLQANSSQYHRHVMNYQFRKPAVGDNAAIYVRN* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g3001 380 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 1 105 IPR031052 GO:0006355
Amo03g3001 380 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 164 322 IPR031052 GO:0006355
Amo03g3001 380 SMART 26again6 207 234 IPR006564 GO:0008270
Amo03g3001 380 Pfam SWIM zinc finger 204 229 IPR007527 GO:0008270
Amo03g3001 380 Pfam FAR1 DNA-binding domain 11 90 IPR004330 -
Amo03g3001 380 ProSiteProfiles Zinc finger SWIM-type profile. 196 232 IPR007527 GO:0008270
Amo03g3001 380 PANTHER OS03G0843700 PROTEIN 1 105 - -
Amo03g3001 380 PANTHER OS03G0843700 PROTEIN 164 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g3001 Amo-Chr3 122593005 122595724 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo03g3001 FAR1 2.3e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g3001 - - adu:110276980 327.791